Pairwise Alignments

Query, 300 a.a., ABC transporter, membrane spanning protein from Agrobacterium fabrum C58

Subject, 307 a.a., Branched-chain amino acid ABC-type transport system, permease components from Pseudomonas stutzeri RCH2

 Score =  300 bits (767), Expect = 4e-86
 Identities = 154/303 (50%), Positives = 215/303 (70%), Gaps = 6/303 (1%)

Query: 3   YFIQQLINGLTLGSIYGLIAIGYTMVYGIIGMINFAHGDIFMLGGFAALIVFLIATSFFA 62
           +++QQLINGLT+GS Y LIAIGYTMVYGIIGMINFAHG+++M+G +   I  ++  S   
Sbjct: 6   HYLQQLINGLTVGSTYALIAIGYTMVYGIIGMINFAHGEVYMIGSYVTFIA-IVGLSMMG 64

Query: 63  GIPVALLLLLMMIVAMLMTGLWNWVIERVAYRPLRGSFRLAPLITAIGMSIALSNFIQVT 122
              + +L++   + AM++T  + + IERVAYRPLRGS RL PLI+AIGMSI L N + + 
Sbjct: 65  LDALPILMIGAFVAAMIVTSAYGYSIERVAYRPLRGSNRLIPLISAIGMSIFLQNVVLLA 124

Query: 123 QGPRNKPIPSMVTESYHFG-----AITVSLKQLIIMVVTSVLLFAFWYIVNKTPLGRAQR 177
           Q  ++K IP+++  +   G      + +S  Q++I VVT V ++     ++++ LGRA R
Sbjct: 125 QDSKDKAIPNLMPGNLVIGESAMNGVVISYMQILIFVVTFVAMYGLTLFISRSRLGRACR 184

Query: 178 ATEQDRKMAALLGVDVDKTISITFIMGAALAAVAGTMYLMYYGVASFSDGFVPGVKAFTA 237
           A  +D KMA LLG++ +  I++TF++GAALAAVA  +  M YGV +   GF+ G+KAFTA
Sbjct: 185 ACAEDLKMANLLGINTNSIIALTFVIGAALAAVAAVLISMQYGVINPHIGFLAGIKAFTA 244

Query: 238 AVLGGIGSLPGAVLGGLLIGLIESLWSAYFSIAYKDVAAFGILAFVLIFKPTGILGRPEV 297
           AVLGGIGS+PGA+LGGL++G+ E+  +  F   YKDV AF +L  VL+F+PTGILGRPEV
Sbjct: 245 AVLGGIGSIPGAMLGGLVLGVAEAFGADIFGDQYKDVVAFSLLILVLLFRPTGILGRPEV 304

Query: 298 EKV 300
           EKV
Sbjct: 305 EKV 307