Pairwise Alignments

Query, 300 a.a., ABC transporter, membrane spanning protein from Agrobacterium fabrum C58

Subject, 304 a.a., branched-chain amino acid ABC transporter permease from Rahnella sp. WP5

 Score =  310 bits (795), Expect = 2e-89
 Identities = 152/302 (50%), Positives = 219/302 (72%), Gaps = 5/302 (1%)

Query: 3   YFIQQLINGLTLGSIYGLIAIGYTMVYGIIGMINFAHGDIFMLGGFAALIVFLIATSFFA 62
           +F+QQL NG+TLG++YGLIAIGYTMVYGIIGMINFAHG+++M+  +   I  L   SFF 
Sbjct: 4   FFLQQLFNGITLGAVYGLIAIGYTMVYGIIGMINFAHGEVYMISAYLCAIA-LALLSFFG 62

Query: 63  GIPVALLLLLMMIVAMLMTGLWNWVIERVAYRPLRGSFRLAPLITAIGMSIALSNFIQVT 122
                LL+L  ++  +++TG++ W IER+AY+PLR S RLAPLI+AIGMS+ L N+ Q++
Sbjct: 63  LHSFPLLILGTLVFTIVVTGVYGWAIERIAYKPLRNSTRLAPLISAIGMSLILQNYAQIS 122

Query: 123 QGPRNKPIPSMVTESYHF----GAITVSLKQLIIMVVTSVLLFAFWYIVNKTPLGRAQRA 178
           QGPR + IP+M+  ++ F      + ++  ++ I+V +   +    +I++ T LGR  RA
Sbjct: 123 QGPRQQGIPTMLDGAFRFHIGESFVQMTYTKIFILVASLAGMLVLSWIISNTKLGRMCRA 182

Query: 179 TEQDRKMAALLGVDVDKTISITFIMGAALAAVAGTMYLMYYGVASFSDGFVPGVKAFTAA 238
            +QDRKMA++LG++ D+ IS+ F++GAA+A +AG +  M YG   F  GF+ G+KAFTAA
Sbjct: 183 VQQDRKMASILGINTDRIISLVFMIGAAMAGLAGVLVTMNYGTFDFYAGFIIGIKAFTAA 242

Query: 239 VLGGIGSLPGAVLGGLLIGLIESLWSAYFSIAYKDVAAFGILAFVLIFKPTGILGRPEVE 298
           VLGGIGSLPGA+LGGL++G+ E+ +S   +  YKDV +FG+L  +LIF+P G+LGRP V 
Sbjct: 243 VLGGIGSLPGAMLGGLILGIAEAQFSGMVNSDYKDVFSFGLLVVILIFRPQGLLGRPVVT 302

Query: 299 KV 300
           KV
Sbjct: 303 KV 304