Pairwise Alignments

Query, 300 a.a., ABC transporter, membrane spanning protein from Agrobacterium fabrum C58

Subject, 308 a.a., high-affinity branched-chain amino acid ABC transporter permease LivH from Rahnella sp. WP5

 Score =  312 bits (799), Expect = 7e-90
 Identities = 165/304 (54%), Positives = 218/304 (71%), Gaps = 8/304 (2%)

Query: 3   YFIQQLINGLTLGSIYGLIAIGYTMVYGIIGMINFAHGDIFMLGGFAALIVFLIATSFFA 62
           YFIQQ+ NG+TLGS Y LIAIGYTMVYGIIGMINFAHG+++M+G + + IV  IA     
Sbjct: 7   YFIQQMFNGVTLGSTYALIAIGYTMVYGIIGMINFAHGEVYMIGSYVSFIV--IAALMMM 64

Query: 63  GIPVALLLL-LMMIVAMLMTGLWNWVIERVAYRPLRGSFRLAPLITAIGMSIALSNFIQV 121
           GI  + LL+    I A++++  + W IERVAY+P+R S RL  LI+AIGMSI L N++ +
Sbjct: 65  GIDASWLLIGAGFIAAIVISSAYGWSIERVAYKPVRNSKRLIALISAIGMSIFLQNYVSL 124

Query: 122 TQGPRNKPIPSMVTESYHFG-----AITVSLKQLIIMVVTSVLLFAFWYIVNKTPLGRAQ 176
           TQG R+  +PS+VT  +  G     A T+S  QLII VVT V + A    +  + +GRA 
Sbjct: 125 TQGSRDLALPSLVTGQWKLGETNGFAATISTMQLIIWVVTFVAMLALTLFIRYSRMGRAC 184

Query: 177 RATEQDRKMAALLGVDVDKTISITFIMGAALAAVAGTMYLMYYGVASFSDGFVPGVKAFT 236
           RA  +D KMA+LLG+  D+ IS+TF++GA +AAVAG +   +YGV +   GF+ G+KAFT
Sbjct: 185 RACAEDLKMASLLGISTDRVISLTFVIGALMAAVAGVLLGQFYGVINPYIGFMAGMKAFT 244

Query: 237 AAVLGGIGSLPGAVLGGLLIGLIESLWSAYFSIAYKDVAAFGILAFVLIFKPTGILGRPE 296
           AAVLGGIGS+PGA++GGL++G+ E+L SAY S  YKDV +F +L  VL+  PTGILGRPE
Sbjct: 245 AAVLGGIGSIPGAMIGGLILGVAEALTSAYLSTEYKDVVSFALLIVVLLVLPTGILGRPE 304

Query: 297 VEKV 300
           VEKV
Sbjct: 305 VEKV 308