Pairwise Alignments

Query, 300 a.a., ABC transporter, membrane spanning protein from Agrobacterium fabrum C58

Subject, 309 a.a., L-proline ABC transporter, permease component 1 (from data) from Herbaspirillum seropedicae SmR1

 Score =  261 bits (666), Expect = 2e-74
 Identities = 137/302 (45%), Positives = 198/302 (65%), Gaps = 9/302 (2%)

Query: 1   MEYFIQQLINGLTLGSIYGLIAIGYTMVYGIIGMINFAHGDIFMLGGFAALIVFLIATSF 60
           M+ FIQQ+INGL LGS+Y LIA+GYTMVYG++ +INFAHGDI M+G    L +  +    
Sbjct: 1   MDIFIQQIINGLVLGSMYALIALGYTMVYGVLNLINFAHGDILMVGAMVGLSLLKVVQQV 60

Query: 61  FAGIPVALLLLLMMIVAMLMTGLWNWVIERVAYRPLRGSFRLAPLITAIGMSIALSNFIQ 120
             G+P  + L++ ++ A+ +  + + +IER+AYRPLR + RLAPLITAIG+SI L     
Sbjct: 61  APGLPGIVQLVIAIVGAIPVCIVVSLLIERIAYRPLRNAPRLAPLITAIGVSILLQTLAM 120

Query: 121 VTQGPRNKPIPS-MVTESYHFGAITVSLKQLIIMVVTSVLLFAFWYIVNKTPLGRAQRAT 179
           +  G    P P  M ++  H     +S  Q++++ +  + +     IV KT +GRA RAT
Sbjct: 121 MIWGRSPLPFPQVMPSDPVHIAGALISPTQIMLLALAVLAMVGLVLIVEKTKMGRAMRAT 180

Query: 180 EQDRKMAALLGVDVDKTISITFIMGAALAAVAGTMYLMYYGVASFSDGFVPGVKAFTAAV 239
            ++ ++A L+GVD +K I +TF +GA LAA+AG M+   Y  A F+ GFVPG+KAF+AAV
Sbjct: 181 AENPRIAGLMGVDANKVIVVTFAIGAGLAAIAGVMWAANYSTAQFAMGFVPGLKAFSAAV 240

Query: 240 LGGIGSLPGAVLGGLLIGLIESLWSAY--------FSIAYKDVAAFGILAFVLIFKPTGI 291
           LGGIG++ GA+LGG+L+GLIESL + Y            Y+D+ AF +L  VL  +P+GI
Sbjct: 241 LGGIGNIYGAMLGGILLGLIESLGAGYIGDLTGNFLGSNYQDIFAFIVLIIVLTLRPSGI 300

Query: 292 LG 293
           +G
Sbjct: 301 MG 302