Pairwise Alignments

Query, 300 a.a., ABC transporter, membrane spanning protein from Agrobacterium fabrum C58

Subject, 306 a.a., high-affinity branched-chain amino acid ABC ransporter, permease protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  205 bits (522), Expect = 9e-58
 Identities = 122/309 (39%), Positives = 182/309 (58%), Gaps = 12/309 (3%)

Query: 1   MEYFIQQLINGLTLGSIYGLIAIGYTMVYGIIGMINFAHGDIFMLGGFAALIVFLIATSF 60
           ME FIQ + N L  GS Y LIA+GYT+VYG++ +INFAHGDIFM+G + +  V  I    
Sbjct: 1   METFIQNIFNALQWGSFYALIALGYTLVYGVLLLINFAHGDIFMVGAYISFFVASILLGQ 60

Query: 61  FAGI-----PVALLLLLMMIVAMLMTGLWNWVIERVAYRPLR--GSFRLAPLITAIGMSI 113
             G      P+AL L + +   M++T      +ERVAYRPLR  G+ RL  +ITA+   I
Sbjct: 61  IGGFFELSGPMALALTVPL--TMVLTAGVGVTLERVAYRPLRRKGAHRLYVVITALMCGI 118

Query: 114 ALSNFIQVTQGPRNKPIPSMVTES-YHFGAITVSLKQLIIMVVTSVLLFAFW-YIVNKTP 171
            L N      G   K +P M+ +  Y  G ++V+  +L++ +VT+ L+FA   +IV +T 
Sbjct: 119 MLENGNLALLGASRKALPEMIDKVVYTIGTVSVTNLKLMV-IVTAFLVFALLQFIVTRTR 177

Query: 172 LGRAQRATEQDRKMAALLGVDVDKTISITFIMGAALAAVAGTMYLMYYGVASFSDGFVPG 231
           +G A RA   D+    L+G+ +D  I  TF++G+  A +AG ++ M Y +     G + G
Sbjct: 178 IGMAMRAVAWDKFALPLMGIPLDSIIVFTFVLGSGFAGLAGLLFAMSYPILDPYMGAMVG 237

Query: 232 VKAFTAAVLGGIGSLPGAVLGGLLIGLIESLWSAYFSIAYKDVAAFGILAFVLIFKPTGI 291
            KAF AAV+GGIG + GA +GG L+  IE + +A F   ++D+ AF IL F++  +PTG+
Sbjct: 238 WKAFIAAVVGGIGDIRGAFIGGFLLAFIEIMVAAVFPSTFRDLFAFSILLFIMWQRPTGL 297

Query: 292 LGRPEVEKV 300
            G  +  K+
Sbjct: 298 FGVAKTTKI 306