Pairwise Alignments

Query, 256 a.a., ABC transporter, substrate binding protein (amino acid) from Agrobacterium fabrum C58

Subject, 260 a.a., ABC transporter for L-Lysine, periplasmic substrate-binding component (from data) from Pseudomonas fluorescens FW300-N2E2

 Score =  152 bits (383), Expect = 9e-42
 Identities = 96/255 (37%), Positives = 142/255 (55%), Gaps = 10/255 (3%)

Query: 1   MKFFATLLAGTAFAVSAFTASA----DVRFGIMNESYPPFFAKDASGKWQGWEIDLMDAV 56
           MK     L+  A  ++A  A+A    ++RFG+ + SY PF +K A G   G++IDL +A+
Sbjct: 1   MKKALLTLSALALCMAAGVATAKEYKELRFGV-DPSYAPFESKAADGSLVGFDIDLGNAI 59

Query: 57  CAEMKEKCSIVELSWDGLIPALQTKKFDVIWSSMSNTQEREKVIDFTNKYYNTPSKLIGA 116
           CAE+K KC  VE  +DG+IP L+  KFD + SSM+ T  REK IDF+++ ++ P+  +  
Sbjct: 60  CAELKVKCKWVESDFDGMIPGLKANKFDGVISSMTVTPAREKAIDFSSELFSGPTAYVFK 119

Query: 117 KGEKPGAAPEDVKGKTIGIQVATIQSEYYKKYF-AAVADEKTYQTLDEAFQDLAAGRIDY 175
           KG         +KGKT+G +  TIQ  Y K     A    + YQ  D+ + DL +GR+D 
Sbjct: 120 KGSGLSEDVASLKGKTVGYEQGTIQEAYAKAVLDKAGVKTQAYQNQDQVYADLTSGRLDA 179

Query: 176 VFGDSLVLD-AFVKSDAGKDCCADMGNVADDKEIMGLGVSGGLRKDDTELKNKLNAAIAA 234
              D L  +  F+KS  G+       +   D E++    + G+RK ++ELK  LN  I A
Sbjct: 180 AIQDMLQAELGFLKSPKGEGYEV---SKPVDSELLPSKTAIGIRKGNSELKALLNKGIKA 236

Query: 235 VRASGKYDEITKKYF 249
           +   GKY EI KK+F
Sbjct: 237 LHDDGKYAEIQKKHF 251