Pairwise Alignments

Query, 512 a.a., ABC transporter, nucleotide binding/ATPase protein (sugar) from Agrobacterium fabrum C58

Subject, 500 a.a., ribose import ATP-binding protein RbsA from Vibrio cholerae E7946 ATCC 55056

 Score =  402 bits (1033), Expect = e-116
 Identities = 225/502 (44%), Positives = 319/502 (63%), Gaps = 15/502 (2%)

Query: 1   MANTILEMRNITKTFPGVKALENVNLKVKEGEIHALVGENGAGKSTLMKVLSGVYPAGTY 60
           M   IL +  I K FPGVKAL+  +L V  G + AL+GENGAGKSTLMKVL+G+Y     
Sbjct: 1   MTQAILALSQIEKAFPGVKALDKASLNVYPGRVMALMGENGAGKSTLMKVLTGIYSKDA- 59

Query: 61  EGEIHYEGAVRNFRAINDSEDIGIIIIHQELALVPLLSIAENIFLGNEVASN-GVISWQQ 119
            G I Y+G   +F+   DS+  GI IIHQEL L+P L+IAENIFLG E+ S  G I W +
Sbjct: 60  -GSIEYQGQPVSFKGPRDSQLAGISIIHQELNLIPQLTIAENIFLGREMTSPFGRILWDE 118

Query: 120 TFNRTRELLKKVGLKESPETLITDIGVGKQQLVEIAKALSKSVKLLILDEPTASLNESDS 179
              +  +LL ++ +K S +TL+ ++ +G+QQ+VEIAKALS   K++I+DEPT +L ++++
Sbjct: 119 MHRKADQLLARLNVKHSAKTLLGELSLGEQQMVEIAKALSFESKVIIMDEPTDALTDTET 178

Query: 180 EALLNLLMEFRNQGMTSIIITHKLNEVRKVADQITVLRDGMTVKTLDCHQEEISEDVIIR 239
           E+L N++ E R QG   + I+H+L E+ ++ D ITVLRDG  +   +C   + +ED +I 
Sbjct: 179 ESLFNVINELREQGCGIVYISHRLKEIFEICDDITVLRDGKFIG--ECRVCDTNEDGLIE 236

Query: 240 NMVGRDLEDRYPPRDVPIGETILEVKNWNAYHQQHRDRQVLHDINVTVRKGEVVGIAGLM 299
            MVGR LE++YP      G+  LEV               +HD++ T++KGE++G++GLM
Sbjct: 237 MMVGRKLEEQYPRIAAQQGDISLEVIGLTG--------SGVHDVSFTLKKGEILGVSGLM 288

Query: 300 GAGRTEFAMSVFGKSYGHRITGDVLIDGKPVDVSTVRKAIDAGLAYVTEDRKHLGLVLND 359
           GAGRTE    ++G     R  G + ++G+ V+  + +  +  G+AY++EDRK  GLVL  
Sbjct: 289 GAGRTELMKVIYGALPSER--GVINLNGRTVNPVSPQDGLANGIAYISEDRKGDGLVLGL 346

Query: 360 NILHNTTLANLAGVSKASIIDDIKEMKVASDFRTRLRIRSSGIFQETVNLSGGNQQKVVL 419
           ++  N +L  L  +SK   I    E+    DF     I++    Q   NLSGGNQQKV +
Sbjct: 347 SVKENMSLCALDQLSKGVQIRHADEVIAVDDFIRLFNIKTPSREQIIGNLSGGNQQKVAI 406

Query: 420 SKWLFSNPDVLILDEPTRGIDVGAKYEIYTIINQLAADGKGVLMISSEMPELLGNCDRIY 479
           +K L + P VLILDEPTRG+DVGAK EIY +INQ  A+G  ++++SSEMPE+LG  DRI 
Sbjct: 407 AKGLMTKPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGMSIILVSSEMPEVLGMSDRIL 466

Query: 480 VMNEGRIVAELPKGEASQESIM 501
           VM+EGRI  E    EA QE +M
Sbjct: 467 VMHEGRISGEFMASEADQEKLM 488



 Score = 70.5 bits (171), Expect = 1e-16
 Identities = 59/230 (25%), Positives = 106/230 (46%), Gaps = 11/230 (4%)

Query: 278 QVLHDINVTVRKGEVVGIAGLMGAGRTEFAMSVFGKSYGHRITGDVLIDGKPVDVSTVRK 337
           + L   ++ V  G V+ + G  GAG++   M V    Y  +  G +   G+PV     R 
Sbjct: 19  KALDKASLNVYPGRVMALMGENGAGKSTL-MKVLTGIYS-KDAGSIEYQGQPVSFKGPRD 76

Query: 338 AIDAGLAYVTEDRKHLGLVLNDNILHNTTLANLAGVSKASIIDDIKEMKVASDFRTRLRI 397
           +  AG++ + ++   L L+    I  N  L          I+ D    K A     RL +
Sbjct: 77  SQLAGISIIHQE---LNLIPQLTIAENIFLGREMTSPFGRILWDEMHRK-ADQLLARLNV 132

Query: 398 RSSGIFQETV--NLSGGNQQKVVLSKWLFSNPDVLILDEPTRGIDVGAKYEIYTIINQLA 455
           + S    +T+   LS G QQ V ++K L     V+I+DEPT  +       ++ +IN+L 
Sbjct: 133 KHSA---KTLLGELSLGEQQMVEIAKALSFESKVIIMDEPTDALTDTETESLFNVINELR 189

Query: 456 ADGKGVLMISSEMPELLGNCDRIYVMNEGRIVAELPKGEASQESIMRAIM 505
             G G++ IS  + E+   CD I V+ +G+ + E    + +++ ++  ++
Sbjct: 190 EQGCGIVYISHRLKEIFEICDDITVLRDGKFIGECRVCDTNEDGLIEMMV 239