Pairwise Alignments

Query, 398 a.a., ABC transporter, membrane spanning protein (sugar) from Agrobacterium fabrum C58

Subject, 333 a.a., ribose ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

 Score =  187 bits (474), Expect = 5e-52
 Identities = 135/372 (36%), Positives = 189/372 (50%), Gaps = 69/372 (18%)

Query: 26  EYGMLIALVAIMVFFQFYTGGILFRPVNLTNLILQNSFIVIMALGMLLVIVAGHIDLSVG 85
           E   LIAL+ ++V   F      F   NL N++ Q S   I+A+GM LVI+   IDLSVG
Sbjct: 31  EQKSLIALLFLVVVVSFLNPNF-FTVDNLLNILRQTSVNAIIAVGMTLVILTAGIDLSVG 89

Query: 86  SIVAFVGAIAAILTVQWGMNPFLAALICLVIGGIIGAAQGYWIAYHRIPSFIVTLAGMLV 145
           S++A  GA AA L V   +   +A    L+ G  +GA  G  IA  ++ +FI TL  M +
Sbjct: 90  SVLALCGAFAATL-VAMEVPVLVAVPTALLAGAALGAISGIIIAKGKVQAFIATLVTMTL 148

Query: 146 FRGLTLFVLGGKNIGPFPTDFQVISTGFLPDIGGIEGLNTTSMILTVLITVALFYLAWRR 205
            RG+T+            TD + ISTGF                     T      AW  
Sbjct: 149 LRGVTMVY----------TDGRPISTGF---------------------TDTADTFAW-- 175

Query: 206 RVVNVKHGIDVEPFGFFIVQNLLISGAILFLGYQLSTYRGLPNVLIVMLVLIALYSFVTR 265
                        FG                GY L    G+P  + +M+V+ A   ++  
Sbjct: 176 -------------FG---------------TGYTL----GIPVPVWLMVVVFAGAWYLLN 203

Query: 266 RTTIGRRVYAMGGNEKATKLSGINTERLSFLTFVNMGVLAGLAGMIIATRLNSATPKAGV 325
            T  GR VYA+GGNE AT+LSGIN +R+    +   G+LA LAG+I+ +RL+SA P AG+
Sbjct: 204 HTRFGRYVYAVGGNESATRLSGINVDRVKIGVYAICGLLAALAGIIVTSRLSSAQPTAGM 263

Query: 326 GFELDVIAACFIGGASASGGVGKITGAVIGAFIMGVMNNGMSIVGLGIDFQQMVKGLVLL 385
           G+ELD IAA  +GG S  GG G+I G +IGA I+G +NN ++++ +   +Q + K +V+L
Sbjct: 264 GYELDAIAAVVLGGTSLMGGKGRIMGTLIGALIIGFLNNALNLLDVSSYYQMIAKAVVIL 323

Query: 386 AAVFFDVYNKNK 397
            AV  D  NKNK
Sbjct: 324 LAVLVD--NKNK 333