Pairwise Alignments

Query, 502 a.a., ATP-dependent RNA helicase from Agrobacterium fabrum C58

Subject, 622 a.a., ATP-dependent RNA helicase RhlE from Pseudomonas fluorescens FW300-N2E2

 Score =  352 bits (903), Expect = e-101
 Identities = 215/534 (40%), Positives = 291/534 (54%), Gaps = 51/534 (9%)

Query: 15  SFNELGLSEKIVASVTQLGYTTPTPIQAKAIPLLLEGRDLIGLAQTGTGKTAAFGLPIIE 74
           SF  LGLSE +V ++   GYT PTP+Q +AIP +L+GRDL+  AQTGTGKT  F LPI+E
Sbjct: 2   SFASLGLSEALVGAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILE 61

Query: 75  MLMK-----QADRPANRTTRTLILAPTRELVNQIGDNLRSFVKKTPLRINQVVGGASINK 129
            L       ++ R   R  R L+L PTREL  Q+ ++ + + +        + GG  +N 
Sbjct: 62  RLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKVYARDLKFVSACIFGGVGMNP 121

Query: 130 QQLQLEKGTDILVATPGRLLDLIARNAISLSKVTYLVLDEADQMLDLGFIHDLRKISRMV 189
           Q   + +G D+LVA PGRLLDL  + ++ LS V  LVLDEAD+MLD+GF+HD++K+   +
Sbjct: 122 QVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARL 181

Query: 190 PPKRQTLLFSATMPKAISELASNFLTDPIKVEVTPPGKAADKVEQYVHFVAGKNDKTDLL 249
           P KRQ LLFSAT  K I++LA   L +P ++EVTPP    +++EQ V F    + K  LL
Sbjct: 182 PAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRV-FRLPASHKRALL 240

Query: 250 KKSLNENPDGRSIVFLRTKHGAEKLYKHLEHIGFKVASIHGNKSQGQRERALKGFKDGEI 309
              +      + +VF RTKHGA +L ++L+  G    +IHGNKSQ  R +AL  FK GE+
Sbjct: 241 AHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLPAVAIHGNKSQNARTKALADFKAGEV 300

Query: 310 KVLVATDVAARGIDIPAVTHVFNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCAPDETRL 369
           ++LVATD+AARG+DI  + HV N++LP V + YVHRIGRT RAGR G AI+  APDE +L
Sbjct: 301 RILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL 360

Query: 370 LHDIEK----------LMKIDIPVASGERPAGLASP--TRPNNNRGGRN---NNGGQPRG 414
           L  IE+          LM  D      E+P     P    P N RG R    N  G   G
Sbjct: 361 LKSIERMTKQKIADGDLMGFDASTIEAEKPEVRERPDVRNPRNARGPRGDGPNGSGGGGG 420

Query: 415 PREGGRHNGE-----------SRPSRNHAPRDADNDLEVTSDFKRVKQAEG--------- 454
            ++ G+  G+            RP+R   PR+     E      R               
Sbjct: 421 RKDKGKDKGKEKSASNSNGRGERPAREQKPREGTPAREQQRPAPRAAADRAPDEFLDDDI 480

Query: 455 -DAGRPAGPRKQRRPA----RKPG--GSGANRHAPAGGNGQEKRASGNGNRGRN 501
            + G       Q++PA    R+PG    GA   AP  G  Q ++   NG R  N
Sbjct: 481 DNFGNRVDYVPQQKPAQGRGRRPGAPAQGAAAGAPRSGQPQGRQ---NGPRNSN 531



 Score = 29.3 bits (64), Expect = 4e-04
 Identities = 28/101 (27%), Positives = 41/101 (40%), Gaps = 17/101 (16%)

Query: 390 AGLASPTRPNNNRGG-RNNNG---GQP----RGPREGGRHNGESR--------PSRNHAP 433
           AG     +P   + G RN+NG   G P     GPR G   +G++R        P+R   P
Sbjct: 512 AGAPRSGQPQGRQNGPRNSNGSSTGTPPAKRSGPRNGAPRDGQARRDDTRPRRPAREDQP 571

Query: 434 RDADNDLEVTSDFKRVKQAEGDAGR-PAGPRKQRRPARKPG 473
           R         S+  ++   E  A R P   +  + P+R  G
Sbjct: 572 RQEPAVQNPRSNQPKIMHKESKADRFPTPEQLDQLPSRPRG 612



 Score = 28.1 bits (61), Expect = 0.001
 Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 12/95 (12%)

Query: 397 RPNNNRGGRNNNGGQPRGPREGGRHNGESRPSRNHAPRDADNDLEVTSDFKRV------- 449
           +P   RG R   G   +G   G   +G+ +  R + PR+++     T   KR        
Sbjct: 494 KPAQGRGRRP--GAPAQGAAAGAPRSGQPQ-GRQNGPRNSNGSSTGTPPAKRSGPRNGAP 550

Query: 450 --KQAEGDAGRPAGPRKQRRPARKPGGSGANRHAP 482
              QA  D  RP  P ++ +P ++P       + P
Sbjct: 551 RDGQARRDDTRPRRPAREDQPRQEPAVQNPRSNQP 585