Pairwise Alignments

Query, 502 a.a., ATP-dependent RNA helicase from Agrobacterium fabrum C58

Subject, 663 a.a., DEAD/DEAH box family ATP-dependent RNA helicase from Vibrio cholerae E7946 ATCC 55056

 Score =  293 bits (749), Expect = 2e-83
 Identities = 156/364 (42%), Positives = 228/364 (62%), Gaps = 7/364 (1%)

Query: 16  FNELGLSEKIVASVTQLGYTTPTPIQAKAIPLLLEGRDLIGLAQTGTGKTAAFGLPIIEM 75
           F++L L+  I++++T++G+ +PTPIQA AIP+LLEGRD +G AQTGTGKTAAF LP++  
Sbjct: 28  FSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLLNK 87

Query: 76  LMKQADRPANRTTRTLILAPTRELVNQIGDNLRSFVKKTP-LRINQVVGGASINKQQLQL 134
           L     +P     + +++APTREL  Q+   +++  +    L++ ++ GGASI  Q   L
Sbjct: 88  LNLSQYKP-----QAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRAL 142

Query: 135 EKGTDILVATPGRLLDLIARNAISLSKVTYLVLDEADQMLDLGFIHDLRKISRMVPPKRQ 194
           + G  I+V TPGR+ DLI R+ + L +    +LDEAD+ML +GF+ D+  I    P   Q
Sbjct: 143 KSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQ 202

Query: 195 TLLFSATMPKAISELASNFLTDPIKVEVTPPGKAADKVEQYVHFVAGKNDKTDLLKKSLN 254
            +LFSATMP  + E+   FL +P  V+V    +   KVEQ    V G  +K + + + L 
Sbjct: 203 RVLFSATMPPMVKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKGV-EKDEAMARLLE 261

Query: 255 ENPDGRSIVFLRTKHGAEKLYKHLEHIGFKVASIHGNKSQGQRERALKGFKDGEIKVLVA 314
                 SIVF+RT+   E+L   L   GFK A++HG+  Q  RER +   K G I +LVA
Sbjct: 262 TEETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVA 321

Query: 315 TDVAARGIDIPAVTHVFNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCAPDETRLLHDIE 374
           TDV ARG+D+P +THV+NYD+P   ++Y+HRIGRT RAGR G AI     ++ R+L  IE
Sbjct: 322 TDVVARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIE 381

Query: 375 KLMK 378
           ++ +
Sbjct: 382 RVTR 385



 Score = 32.0 bits (71), Expect = 7e-05
 Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 5/61 (8%)

Query: 442 VTSDFKRVKQAEGDAGRPAGPRKQRRPARKPGGSGANRHAPAGGNGQEKRASGNGNRGRN 501
           V  DF   +++ G A R  GPR  R   R+P G   NR     G  +  R  G G  G  
Sbjct: 574 VVCDFDDFRESRGGARREGGPR--REGGRRPEG---NREGGFRGGREGGREGGRGRGGEG 628

Query: 502 R 502
           R
Sbjct: 629 R 629