Pairwise Alignments

Query, 502 a.a., ATP-dependent RNA helicase from Agrobacterium fabrum C58

Subject, 422 a.a., DEAD/DEAH box helicase from Vibrio cholerae E7946 ATCC 55056

 Score =  317 bits (811), Expect = 7e-91
 Identities = 171/370 (46%), Positives = 246/370 (66%), Gaps = 3/370 (0%)

Query: 15  SFNELGLSEKIVASVTQLGYTTPTPIQAKAIPLLLEGRDLIGLAQTGTGKTAAFGLPIIE 74
           +F++LGL  +++ ++++LG   PTPIQ +AIP +L+G+D++  AQTGTGKTAAFGLP+I+
Sbjct: 7   TFSQLGLDSRLLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQ 66

Query: 75  MLMKQA-DRPAN-RTTRTLILAPTRELVNQIGDNLRSFVKKTPLRINQVVGGASINKQQL 132
             ++Q   R AN +  R L+L PTREL  Q+ D+L+++ K T L+I  V GG S+  Q  
Sbjct: 67  RFIEQPWQREANSKEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQLN 126

Query: 133 QLEKGTDILVATPGRLLDLIARNAISLSKVTYLVLDEADQMLDLGFIHDLRKISRMVPPK 192
            L  G DIL+ATPGRLLD     ++ L KV  LVLDEAD+MLD+GF+ DL+++ R + P 
Sbjct: 127 HLRGGVDILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSPL 186

Query: 193 RQTLLFSATMPKAISELASNFLTDPIKVEVTPPGKAADKVEQYVHFVAGKNDKTDLLKKS 252
           RQTL FSAT    I  +A   + DPI+V+VTP    A+ V+Q V+ V  K  K +LL   
Sbjct: 187 RQTLFFSATFDSKIKAVAYRIMRDPIEVQVTPSNSTAETVQQMVYPV-DKKRKRELLSYL 245

Query: 253 LNENPDGRSIVFLRTKHGAEKLYKHLEHIGFKVASIHGNKSQGQRERALKGFKDGEIKVL 312
           +      + +VF +T+ G++ L + L+  G K  SI+G+KSQG R++AL  FK G+++ L
Sbjct: 246 IGSKNWQQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVRAL 305

Query: 313 VATDVAARGIDIPAVTHVFNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCAPDETRLLHD 372
           +ATDVAARG+DI  +  V NYD+P   + YVHRIGRT RAG  G+A++  + DE   L  
Sbjct: 306 IATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDEQPQLEA 365

Query: 373 IEKLMKIDIP 382
           IE+L+   +P
Sbjct: 366 IERLLNTRLP 375