Pairwise Alignments

Query, 502 a.a., ATP-dependent RNA helicase from Agrobacterium fabrum C58

Subject, 503 a.a., ATP-dependent RNA helicase from Sinorhizobium meliloti 1021

 Score =  599 bits (1545), Expect = e-176
 Identities = 325/505 (64%), Positives = 378/505 (74%), Gaps = 22/505 (4%)

Query: 13  LTSFNELGLSEKIVASVTQLGYTTPTPIQAKAIPLLLEGRDLIGLAQTGTGKTAAFGLPI 72
           +++F ELGLSE IVA+++  G+  PTPIQA+AIPL+L+  DLIGLAQTGTGKTAAFGLP+
Sbjct: 1   MSTFKELGLSEHIVATLSANGFEKPTPIQAQAIPLVLKDHDLIGLAQTGTGKTAAFGLPM 60

Query: 73  IEMLMKQADRPANRTTRTLILAPTRELVNQIGDNLRSFVKKTPLRINQVVGGASINKQQL 132
           IE L+    RP  R  R L+LAPTRELVNQI  NL+ FVKK+PL+I  VVGG SINKQ  
Sbjct: 61  IEKLVADGRRPDPRNIRALVLAPTRELVNQIAANLKLFVKKSPLKIGLVVGGVSINKQTE 120

Query: 133 QLEKGTDILVATPGRLLDLIARNAISLSKVTYLVLDEADQMLDLGFIHDLRKISRMVPPK 192
           QL +G DILVATPGRLLDL++R A++L++  YLVLDEADQMLDLGFIHDLRKIS++VP  
Sbjct: 121 QLARGVDILVATPGRLLDLVSRKAVTLTQARYLVLDEADQMLDLGFIHDLRKISKLVPKN 180

Query: 193 RQTLLFSATMPKAISELASNFLTDPIKVEVTPPGKAADKVEQYVHFVAGKNDKTDLLKKS 252
           RQTLLFSATMPK I+ELA  +LTDP+KVEV+PPGKAADKVEQYVHFV GK+ KT +LK++
Sbjct: 181 RQTLLFSATMPKLIAELAGEYLTDPVKVEVSPPGKAADKVEQYVHFVPGKDLKTTILKQT 240

Query: 253 LNENPDGRSIVFLRTKHGAEKLYKHLEHIGFKVASIHGNKSQGQRERALKGFKDGEIKVL 312
           L  NPDG S++F RTKHGAEKL KHL+H+GFK ASIHGNKSQGQRERALK F+DGEI+VL
Sbjct: 241 LTANPDGLSLIFSRTKHGAEKLMKHLDHVGFKAASIHGNKSQGQRERALKAFRDGEIRVL 300

Query: 313 VATDVAARGIDIPAVTHVFNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCAPDETRLLHD 372
           VATDVAARGIDIP VTHV+NYDLPEVPDAYVHRIGRTAR GRDGIAIAFCAPDE RLL D
Sbjct: 301 VATDVAARGIDIPGVTHVYNYDLPEVPDAYVHRIGRTARNGRDGIAIAFCAPDEIRLLRD 360

Query: 373 IEKLMKIDIPVASGERPAGLASPTRPNNNRGGRNN----NGGQPRGPREGGRHNG--ESR 426
           IEKLM I I VASGE PA  A   RP+  RGGR N      GQPRG   G R  G    R
Sbjct: 361 IEKLMGIQIAVASGEAPADQA---RPSKGRGGRGNGQPRGNGQPRGNGAGQRQGGPRRDR 417

Query: 427 PSRNHAPRDADND---LEVTSDFKRVKQAEGDA---GRPAGPR--KQRRPARKPGGSGAN 478
           P R  A      D    +  S  +R ++A G     GRP G R  K ++   +PG   A 
Sbjct: 418 PQRQAAAGGFAGDELLRDERSHERRDQRAAGHGPADGRPEGHRNHKAQKHHGRPGPQQAR 477

Query: 479 RHAPA-----GGNGQEKRASGNGNR 498
           R +       GG  + +RA G G++
Sbjct: 478 RGSEQSGERNGGGNRPQRADGRGHQ 502