Pairwise Alignments

Query, 502 a.a., ATP-dependent RNA helicase from Agrobacterium fabrum C58

Subject, 538 a.a., DEAD/DEAH box helicase from Methanococcus maripaludis S2

 Score =  308 bits (788), Expect = 4e-88
 Identities = 163/370 (44%), Positives = 242/370 (65%), Gaps = 7/370 (1%)

Query: 13  LTSFNELGLSEKIVASVTQLGYTTPTPIQAKAIPLLLEG-RDLIGLAQTGTGKTAAFGLP 71
           + SF  LGLS++I+ ++ + G+T PTPIQ +AIP+L+EG RD++G AQTGTGKTAAFG+P
Sbjct: 1   MESFKNLGLSDEILEALEKKGFTNPTPIQEQAIPILIEGKRDIVGQAQTGTGKTAAFGIP 60

Query: 72  IIEMLMKQADRPANRTTRTLILAPTRELVNQIGDNLRSFVKKTPLRINQVVGGASINKQQ 131
           I+E + + +     R T+ LILAPTREL  Q+ + + S      L +  V GG SI++Q 
Sbjct: 61  ILETIDEHS-----RNTQALILAPTRELAIQVAEEIDSIKGSKRLNVFPVYGGQSIDRQI 115

Query: 132 LQLEKGTDILVATPGRLLDLIARNAISLSKVTYLVLDEADQMLDLGFIHDLRKISRMVPP 191
            +L +G  I+V TPGR+LD I+R  I L  V+Y+VLDEAD+ML++GFI D+ +I + V  
Sbjct: 116 RELRRGVQIVVGTPGRILDHISRRTIKLENVSYVVLDEADEMLNMGFIDDVEEILKSVST 175

Query: 192 KRQTLLFSATMPKAISELASNFLTDPIKVEVTPPGKAADKVEQYVHFVAGKNDKTDLLKK 251
            ++ LLFSAT+P +I +LA N++ +   ++V          +Q  + +  + DK +LL +
Sbjct: 176 DKRMLLFSATLPDSIMKLAKNYMREYDIIKVKRQQLTTTLTDQSFYEIHSR-DKFELLSR 234

Query: 252 SLNENPDGRSIVFLRTKHGAEKLYKHLEHIGFKVASIHGNKSQGQRERALKGFKDGEIKV 311
            ++   +   ++F +TK   +++   L   G+    +HG+ +Q QRE+ L  FK  +I V
Sbjct: 235 IIDTEKEFYGLIFCKTKADVDEVANRLNEKGYAAEGLHGDMTQAQREKTLDKFKGKKINV 294

Query: 312 LVATDVAARGIDIPAVTHVFNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCAPDETRLLH 371
           LVATDVAARGIDI  +THV N+D+P+ P++YVHRIGRT RAG+ G AI F  P E R   
Sbjct: 295 LVATDVAARGIDINDLTHVVNFDIPQNPESYVHRIGRTGRAGKQGYAITFVEPSEFRKFK 354

Query: 372 DIEKLMKIDI 381
            I+K+ K +I
Sbjct: 355 YIQKIAKTEI 364