Pairwise Alignments

Query, 1231 a.a., two component sensor kinase/response regulator hybrid from Agrobacterium fabrum C58

Subject, 1230 a.a., PAS/PAC sensor hybrid histidine kinase (RefSeq) from Shewanella loihica PV-4

 Score =  301 bits (770), Expect = 3e-85
 Identities = 196/572 (34%), Positives = 306/572 (53%), Gaps = 50/572 (8%)

Query: 657  DVTEMKVREEELQRLLSRAEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKSKLDTRQ 716
            D+T  K  E  L      AE+A+  KSEFLANMSHEIRTPMN ++GM +L ++++L  +Q
Sbjct: 697  DITRHKSNEVALLEAKQDAESANLYKSEFLANMSHEIRTPMNAIIGMLQLASRTQLTPQQ 756

Query: 717  KTFTDIIVKSGNALLTIINDILDFSKIEAGQMKLRSVPFDPAEAVEDVVSLLSSAALEKD 776
              + D    S  +LL IINDILDFSKIEAG+++L  V F   + ++  + L +  A EK 
Sbjct: 757  ADYLDKAGFSAQSLLRIINDILDFSKIEAGKLELERVAFPLDKVLDHALDLNALKAQEKG 816

Query: 777  IELIVRIDASVSGKVIGDAGRFRQIVTNIVGNAVKFTETGHVLVELSAQSAEASESIFSL 836
            +EL++    +    + GD  R  Q++ N++ NAVKFT++G   +EL  +     +   +L
Sbjct: 817  VELLLYAPVTAGLILEGDPLRLGQVLINMLSNAVKFTQSGE--IELGCEDVGERDHRITL 874

Query: 837  R--VEDSGIGIPVDKLETIFDKFSQVDGSATRRHEGTGLGLAITVGLVGLFDGKINVVSE 894
            +  V D+GIGI  ++ E++FD F+Q DGS TR++ GTGLGL+I+  LV +  G + V SE
Sbjct: 875  KFWVRDTGIGISKEQQESLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGTMQVQSE 934

Query: 895  VGRGSAFEVDIPFQVMERRRDVPLL-SVAIDDIRVLVIDDNDVNRRILTEQLRSWGIDGH 953
            +G GS F   I F++ E     PL+    I +++ LV+DDN    +I +  +R +  D  
Sbjct: 935  LGVGSTFSFTISFEIAEEAEVKPLIVPEVIGNLKTLVVDDNPTALQIYSTAMRDFHFDVD 994

Query: 954  AVENGPSGIAVLQEAASLGFAIDAIILDYHMPVMNGLDVVERIR---ADKRFDDIAIVFL 1010
               NG   +  L+        +D ++LD+ MP M+G++V++ +    AD R +   ++ +
Sbjct: 995  TASNGAEALYKLEHR-----PVDLLLLDWMMPEMDGVEVIKALDAMVADGRLEKRPVIIM 1049

Query: 1011 TSMDVVGDETL---FTDLSVQAHLMKPARARLLRSTLFDVVRDVRLKRIRQHPLAQGTGG 1067
              M     E L     DL + A L KP +A    S LFD +    + + + +P A     
Sbjct: 1050 --MTAYASEPLKEDLDDLDIYAMLQKPFKA----SALFDEIIAAFIDKPKINPAA----- 1098

Query: 1068 EKARPESRPAEKKQRAEAPATVPERSRPCLLDVLVAEDNDVNQIVFSQILQQAGLRFLIV 1127
                  + P E                     +L+ EDN +NQ V +++L+ AG    + 
Sbjct: 1099 ------ALPVEGNATGTG-------------QILLVEDNFINQQVATELLKSAGYEVDVA 1139

Query: 1128 GNGKRAVQAWEEYNPALILMDVSMPVMNGHQATQAIRAAEQAAGDSRHVPVIGVTAHTQE 1187
             NG+ A+   +      +LMD+ MPVM+G  AT+ +R           +PVI +TAH   
Sbjct: 1140 ENGQVALDMVDAKQYDAVLMDIQMPVMDGLTATKELRKRY----TKEELPVIAMTAHAMS 1195

Query: 1188 ADRERCLEAGMDDYLSKPISPESLEDKIAQWL 1219
             DRE+ L AGM+ +++KPI    L D +AQW+
Sbjct: 1196 GDREKSLAAGMNAHITKPIVLNELFDTLAQWI 1227