Pairwise Alignments

Query, 431 a.a., D-alanyl-D-alanine carboxypeptidase (penicillin binding protein) from Agrobacterium fabrum C58

Subject, 468 a.a., Serine-type D-Ala-D-Ala carboxypeptidase (NCBI) from Rhodospirillum rubrum S1H

 Score =  300 bits (767), Expect = 8e-86
 Identities = 182/440 (41%), Positives = 252/440 (57%), Gaps = 26/440 (5%)

Query: 17  LTFFCAILSLQASPAQA--GYAHFIMDANTGKVLAARNADVLNHPASLTKMMTLYMTFEA 74
           L     +  L   P QA  GYA  ++DA+TG+VL ARNAD+ N+PASLTKMMTLY+ FEA
Sbjct: 28  LAMLAVVFLLLGLPTQAFAGYASIVVDASTGRVLQARNADMRNYPASLTKMMTLYLLFEA 87

Query: 75  LHAGRLRWDQKITMSKNGASVIPSKLYVRQGQTFTVREAVYGMIVKSANDMAEGMGDHLG 134
           +  G+   + ++ +SK  A+  PSKL V  G    V  A+  ++ KSAND+A  + + LG
Sbjct: 88  IDNGKYTLESRLPVSKWAANQAPSKLGVAAGTGIKVEHAIKALVTKSANDVAVVIAEALG 147

Query: 135 GSEARFAEMMTRKARQLGMSKTVFRNASGLPSKSQVTTARDMARLGLALQRDFPKEYGLF 194
           G+EA F+ +MTRKA  LGMS+T FRNASGLP+  Q+TTARDMA L +AL R FP  Y  F
Sbjct: 148 GTEANFSALMTRKAAALGMSQTTFRNASGLPNNGQMTTARDMAVLSMALIRHFPNHYRFF 207

Query: 195 AMESFSFRGKRIRGHNNLMYRYQGMDGIKTGYTNASGFNLVSAINHNGRRVVGVVLGGKT 254
           A +SF F  + I  HN+++  Y G DG+KTGY  ASGFN+ S+   NGRR+V VV GG+T
Sbjct: 208 ATQSFRFGNRTITTHNHVVREYPGADGLKTGYIQASGFNVASSAVRNGRRLVAVVFGGQT 267

Query: 255 ARSRDAQMAALLDK----------AVPQASRSRNTEQLVASANVSRTFDVAAA----LPP 300
           AR+RD QM ALLD+          +V QA R  +    +  A      D+ +A    +PP
Sbjct: 268 ARARDTQMMALLDEGFATLAREGGSVVQAKRKPDAIASIIKAKEPPAADMGSADDAPMPP 327

Query: 301 ASVPLPMFAERRADPV-AMQIAT-ANSQMADMMQVSAIPRPAPAAATTGERSR------W 352
           A  P  + A         M +AT   S  A   + +  PRP P A TT   S+      W
Sbjct: 328 AYKPGSLTASVSGGRTQQMALATPMRSSPAPSAKSAPGPRPTPIARTTPVPSKGAAKGDW 387

Query: 353 EVQIAATDSEAAARSLLANARSNIGSYT--GIAPYTEAVQSGSATLYRARFTGFEDQSSA 410
            +Q+ A    AAA +    A   + +     ++P     +SGS T+YRAR TG  ++++A
Sbjct: 388 GIQVGAYAKSAAATAAANKAIGLLAAEARRQVSPVVVQRKSGSGTIYRARLTGLSNEAAA 447

Query: 411 VSACKELKAQSYACVVMTSE 430
            +AC  L    ++C+V+  +
Sbjct: 448 RTACATLVRNDHSCLVVAPQ 467