Pairwise Alignments

Query, 431 a.a., D-alanyl-D-alanine carboxypeptidase (penicillin binding protein) from Agrobacterium fabrum C58

Subject, 390 a.a., Serine-type D-Ala-D-Ala carboxypeptidase (RefSeq) from Shewanella loihica PV-4

 Score =  172 bits (437), Expect = 1e-47
 Identities = 95/243 (39%), Positives = 149/243 (61%), Gaps = 4/243 (1%)

Query: 29  SPAQAGYAHFIMDANTGKVLAARNADVLNHPASLTKMMTLYMTFEALHAGRLRWDQKITM 88
           +P  A  A  +MD N+G+++A  NA    +PASLTKMMT Y+    +  G +    K+T+
Sbjct: 32  APKVAAKAFILMDYNSGQIIAEENAYESLNPASLTKMMTSYVIGHEIKVGNISPQDKVTI 91

Query: 89  SKNGASVI---PSKLYVRQGQTFTVREAVYGMIVKSANDMAEGMGDHLGGSEARFAEMMT 145
           SKN  S      SK+++  G+  +V E   G+I++S ND    M +H+ G+E  F ++M 
Sbjct: 92  SKNAWSKNFPDSSKMFIEVGKQVSVEELNRGIIIQSGNDACVAMAEHIAGTEDGFVDLMN 151

Query: 146 RKARQLGMSKTVFRNASGLPSKSQVTTARDMARLGLALQRDFPKEYGLFAMESFSFRGKR 205
             A+QLGM  + F N+ GL S++  TTA DMA LG AL RD P+EY +++ +SF++ G +
Sbjct: 152 SWAKQLGMRDSYFENSHGLDSENHKTTAYDMALLGAALIRDVPEEYRVYSEKSFTYNGIK 211

Query: 206 IRGHNNLMY-RYQGMDGIKTGYTNASGFNLVSAINHNGRRVVGVVLGGKTARSRDAQMAA 264
               N L++ +   +DGIKTG+T+ +G+NLV++   +G R+V VVLG  +  +R A+   
Sbjct: 212 QYNRNGLLWDKSLNVDGIKTGHTSGAGYNLVTSATKDGMRLVSVVLGTASESARKAESKK 271

Query: 265 LLD 267
           LL+
Sbjct: 272 LLN 274