Pairwise Alignments

Query, 476 a.a., GTP-binding protein from Agrobacterium fabrum C58

Subject, 494 a.a., ribosome biogenesis GTPase Der from Vibrio cholerae E7946 ATCC 55056

 Score =  326 bits (835), Expect = 1e-93
 Identities = 190/480 (39%), Positives = 280/480 (58%), Gaps = 21/480 (4%)

Query: 5   VAIVGRPNVGKSTLFNRLVGKKLALVDDTPGVTRDRRPGDAKLIDLRFTIIDTAGLEQSG 64
           VA+VGRPNVGKSTLFNRL   + ALV D PG+TRDR+ G AKL +  F +IDT G++ S 
Sbjct: 5   VALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGQAKLGEHEFIVIDTGGIDGS- 63

Query: 65  PETLQGRMWAQTEAAIDEADVTLFVIDAKAGLTPADETLGEMLRRRGKPVVLVANKSEAR 124
            E ++ +M  Q+ AAIDEADV LF++D +AGLT ADE + + LRR  KP +LV NK +  
Sbjct: 64  EEGVETKMAQQSLAAIDEADVVLFMVDGRAGLTVADEAIAQHLRRIEKPAILVVNKVDGI 123

Query: 125 GSDAGFYDAFTLGLGEPCPVSAEHGQGMIDLRDAIVEAIGEDMAFPPDVDEAETDIVLPR 184
            +DA   + + LG+ +   ++A HG+G+  L D ++    E M    + ++A+ + +   
Sbjct: 124 DADAASAEFWQLGMDQMYQIAAAHGRGVGALIDRVLNPFAEQM----ESEQAQLEDLTNE 179

Query: 185 TEPGSEE----EEDEEPVYDETK--PLRVAIIGRPNAGKSTLINRFLGEDRLLTGPEAGI 238
            +P  E+    EE+ E  Y   +  P+++AIIGRPN GKSTL NR LGE+R++     G 
Sbjct: 180 EDPEEEQLEYSEEEAEAEYKRLQDLPIKLAIIGRPNVGKSTLTNRILGEERVVVYDMPGT 239

Query: 239 TRDSISVEWDWRGRTIKMFDTAGMRRKAKVTEKLEKLSVADSLRSIRFAETVVIVFDSTI 298
           TRDSI +      R   + DTAG+RR+ ++ E +EK SV  +L++I  A  V++V D+  
Sbjct: 240 TRDSIYIPMKRDEREYVLIDTAGVRRRKRINETVEKFSVVKTLQAIEDANVVLLVVDARE 299

Query: 299 PFEKQDLQLVDLVIREGRAAVLAFNKWDLVEDPQAYLADLREKTERLLPQARGI----RA 354
               QDL L+   +  GR+ V+A NKWD          D++E  ++ L +  G     R 
Sbjct: 300 NISDQDLSLLGFALNSGRSIVIAVNKWD------GLSFDVKEHVKKELDRRLGFVDFARI 353

Query: 355 VPMSGQTGYGLDRLMQSIIDTDKTWNRRISTAKLNRWLDAQTTQHPPPAVSGRRLKLKYM 414
             +S   G G+  L +S+ +  ++   R+ T+ L R +   T  H PP V GRR+KLKY 
Sbjct: 354 HFISALHGTGVGHLFESVQEAYRSATTRVGTSVLTRIMKMATDDHQPPMVRGRRVKLKYA 413

Query: 415 TQVKARPPAFMISCTRPEAIPESYTRYLVNGLRKDFDMPGVPIRVHYRGSDNPFESKAKK 474
                 PP  +I   +   +P+SY RYL+N  RK  ++ G PIR+ ++ S+NPFE K  K
Sbjct: 414 HAGGYNPPIIVIHGNQVNELPDSYKRYLMNYYRKSLEIMGTPIRIQFQNSENPFEGKTNK 473