Pairwise Alignments

Query, 476 a.a., GTP-binding protein from Agrobacterium fabrum C58

Subject, 708 a.a., ribosome biogenesis GTPase Der from Bifidobacterium breve UCC2003

 Score =  260 bits (665), Expect = 9e-74
 Identities = 158/456 (34%), Positives = 244/456 (53%), Gaps = 33/456 (7%)

Query: 5   VAIVGRPNVGKSTLFNRLVGKKLALVDDTPGVTRDRRPGDAKLIDLRFTIIDTAGLEQSG 64
           +AIVGRPNVGKS+L NR++G++ A+V+DTPGVTRDR   DA+     F ++DT G E + 
Sbjct: 275 LAIVGRPNVGKSSLVNRILGRRAAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWE-AD 333

Query: 65  PETLQGRMWAQTEAAIDEADVTLFVIDAKAGLTPADETLGEMLRRRGKPVVLVANKSEAR 124
            E ++  + +Q + A+  AD  +FV+D + G+T  DE + +MLR  GKPVVL  NK +  
Sbjct: 334 VEGIESAIASQAQVAVTLADAVVFVVDGQVGMTTTDERIVKMLRASGKPVVLAVNKIDDN 393

Query: 125 GSDAGFYDAFTLGLGEPCPVSAEHGQGMIDLRDAIVEAIGEDMAFPPDVDEAETDIVLPR 184
            S+    + + LGLGEP  +SA HG+G+ DL D  +                        
Sbjct: 394 ASEYLAAEFWKLGLGEPYSISAMHGRGVGDLLDVAL------------------------ 429

Query: 185 TEPGSEEEEDEEPVYDETKPLR-VAIIGRPNAGKSTLINRFLGEDRLLTGPEAGITRDSI 243
              G  +E ++   Y     LR VA++GRPN GKS+L+N+    +R +    AG TRD +
Sbjct: 430 ---GKLKEAEKASGYLTPSGLRRVALVGRPNVGKSSLLNQLAHSERAVVNDLAGTTRDPV 486

Query: 244 SVEWDWRGRTIKMFDTAGMRRKAKVTEKLEKLSVADSLRSIRFAETVVIVFDSTIPFEKQ 303
               D  G      DTAG++R+       E  S   +  +I  +E  +I+FD++ P   Q
Sbjct: 487 DEIVDIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALILFDASQPISDQ 546

Query: 304 DLQLVDLVIREGRAAVLAFNKWDLVEDPQAYLADLREKTERLLPQARGIRAVPMSGQTGY 363
           DL+++   +  GRA VL FNKWD +++      +    TE    +      V +S +TG+
Sbjct: 547 DLKVMSTAVDAGRAIVLVFNKWDAMDEFDKQRLERLWNTE--FDRVMWAERVNLSAKTGW 604

Query: 364 GLDRLMQSIIDTDKTWNRRISTAKLNRWLDAQTTQHPPPAVSGRRLKLKYMTQVKARPPA 423
             +RL +++    ++W++RI T KLN +L      HP P   G++ ++ + TQ   RPP 
Sbjct: 605 HTNRLARAMNTALESWDQRIPTGKLNAFLGRIQAAHPHPLRGGKQPRILFATQASTRPPR 664

Query: 424 FMISCTRPEAIPESYTRYLVNGLRKDFDMPGVPIRV 459
           F+I  T    +   Y RY+   LR++F   G PI++
Sbjct: 665 FVIFAT--GFLEHGYRRYIERQLREEFGFEGTPIQI 698



 Score = 83.2 bits (204), Expect = 3e-20
 Identities = 51/165 (30%), Positives = 81/165 (49%), Gaps = 11/165 (6%)

Query: 172 DVDEAETDIVLPRTEPGSEEEEDEEPVYDETKPLRVAIIGRPNAGKSTLINRFLGEDRLL 231
           D+DE + D++  R       +   +PV        +AI+GRPN GKS+L+NR LG    +
Sbjct: 246 DLDEGDEDLISGRGFEDGARKSGPKPVGV------LAIVGRPNVGKSSLVNRILGRRAAV 299

Query: 232 TGPEAGITRDSISVEWDWRGRTIKMFDTAGMRRKAKVTEKLEKLSVADSLRSIRFAETVV 291
                G+TRD +S + +W G   K+ DT G        E +E    + +  ++  A+ VV
Sbjct: 300 VEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEAD---VEGIESAIASQAQVAVTLADAVV 356

Query: 292 IVFDSTIPFEKQDLQLVDLVIREGRAAVLAFNKWDLVEDPQAYLA 336
            V D  +     D ++V ++   G+  VLA NK D  ++   YLA
Sbjct: 357 FVVDGQVGMTTTDERIVKMLRASGKPVVLAVNKID--DNASEYLA 399