Pairwise Alignments

Query, 317 a.a., ABC transporter, substrate binding protein (proline/glycine betaine) from Agrobacterium fabrum C58

Subject, 287 a.a., Substrate-binding region of ABC-type glycine betaine transport system (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score = 91.7 bits (226), Expect = 2e-23
 Identities = 79/291 (27%), Positives = 134/291 (46%), Gaps = 12/291 (4%)

Query: 7   RCLALAAAISSMTFSAAVAAEPASCGT-VRFSDVGWTDITATTATATVLLK-SLGYETDV 64
           + L +  A+  +   A  AA  A+ G  VR + V W   TA+T  A  +++ SLG + +V
Sbjct: 3   KVLLMTMAVLLLAAPALAAAPMATDGKPVRLAYVEWDCATASTHLAKAVIEDSLGRKVEV 62

Query: 65  KLLSVPVTYTSLKNKDIDVFLGNWMPTMEGDIAPYRDDKSVETLRENLTGAKYTLATNAK 124
             +S    + ++   D+D  +  W+P   GD     + K V+ L   + GA+   A    
Sbjct: 63  LPVSAAAMWMAVATGDVDGMVTAWLPVTHGDYLKKVEGK-VQDLGPLVGGARLGWAVPDY 121

Query: 125 GAELGIKDFKDIAAHSSELGGKIYGIEPGNDGNRLILDMVAKDSFGLKSFEVVESSEQGM 184
              + +K  +++  ++ +  GK+ GI+PG+    + L   A   +GL    +VE S   M
Sbjct: 122 ---VPLKSIEELKVNADKFKGKVIGIDPGS--GLMKLSEKAMHEYGLNKLTLVEGSGATM 176

Query: 185 LSQVARAEKSGEPIVFLGWEPHPMNANFKLTYLTGGDEVFGPNFGGATIYTNVRKGYVEE 244
            + +  A +  E IV   W PH M   +KL YL    +V G       I+T VR G  ++
Sbjct: 177 TAALDDAIRRKEWIVVTAWSPHWMFGRWKLHYLDDPKKVLGEE---ERIHTVVRNGLDKD 233

Query: 245 CPNVGAFLKNLQFSLPMENE-IMGKILNDGLEGEAAATAWLKANPAAIEPW 294
            P V AFL   +++   + E +M      G +  A A  ++K +P  +  W
Sbjct: 234 MPEVYAFLDRFRYADANQLETLMAWNQEKGADLMANARRFMKEHPELVREW 284