Pairwise Alignments

Query, 368 a.a., ABC transporter, substrate binding protein (branched chain amino acid) from Agrobacterium fabrum C58

Subject, 370 a.a., Extracellular ligand-binding receptor (NCBI) from Rhodospirillum rubrum S1H

 Score =  304 bits (778), Expect = 3e-87
 Identities = 166/362 (45%), Positives = 227/362 (62%), Gaps = 5/362 (1%)

Query: 4   KTLTSVTLAASFAFAPL-AHAEIVIGLIAPLTGPVAAYGDQVKNGAQTAVSEINKKGGIL 62
           K + SVT++A  A +PL A A+I +GL   LTG +AA G+Q + GA+ A++  NK GG+ 
Sbjct: 6   KAVFSVTVSA-LAISPLPALADIPVGLALGLTGQIAAIGEQSRRGAEAAIAAFNKAGGLK 64

Query: 63  GEQVVLKLADDGGEPKQGVSAANQLVAEGIHFVVGPVTSGVAIPASDVFAENGVLMVTPT 122
           GE + L++ DD  +PKQGV+ AN+ V+ G+  V+G + +G  + AS V++E  + MVT +
Sbjct: 65  GETITLQVEDDACDPKQGVAVANKFVSAGVEAVIGHMCTGPTMAASTVYSEEEIPMVTAS 124

Query: 123 ATAPGLTNRGLSNVFRTCGRDDQQAEVAAKYVLANLKGKKIAIIHDKGAYGKGLADSFKA 182
           AT P LT RGL+NVFR  GRDDQQ  +A K +      +  AI+HDK AYG+GLA+  K 
Sbjct: 125 ATGPDLTERGLTNVFRATGRDDQQGTIAGKMIAERFADQTTAIVHDKQAYGRGLAEEAKK 184

Query: 183 TLNAGGVTEVLYDALTPGEKDLGALTARLKSDNADIVYFGGYHPEAGLLVRQLKDIGSKA 242
            +NA G  E L+ A+ PGE+D  AL +RLK     +VY+GGY+ + G +VRQ +  G  A
Sbjct: 185 AMNAAGKEEALFAAIVPGEQDFSALISRLKQAGVKVVYYGGYYNDLGQIVRQSRAQGLDA 244

Query: 243 AVIGGDGLSNSEFWNIGAKAGEGTIFTNASDALKNDDSKAAAEALKA-ANIPAEAFTLNA 301
             +GGDGLS+SEFW I  +AGEGT+FT   DA  N  +K A EA KA     A+ F    
Sbjct: 245 VFVGGDGLSSSEFWAITGEAGEGTLFTFTPDASTNPAAKEAVEAFKADGKGDADNFAYYY 304

Query: 302 YAAVEVLKAGIEKAGSAKDSEAVAKVLKSGEAFPTAIGKVTYGDNGDLTSQAFSLFKWQD 361
           YAA +VL   + KAGSA D EAV K L+    F T  G + +   GDLT+ AF  ++W  
Sbjct: 305 YAAAQVLTQAMAKAGSA-DPEAVTKALRD-NTFETVAGPMDFDAKGDLTAPAFVFYQWSA 362

Query: 362 GK 363
           GK
Sbjct: 363 GK 364