Pairwise Alignments

Query, 169 a.a., ECF family sigma factor from Agrobacterium fabrum C58

Subject, 190 a.a., RNA polymerase sigma factor from Burkholderia phytofirmans PsJN

 Score =  132 bits (331), Expect = 4e-36
 Identities = 77/168 (45%), Positives = 104/168 (61%), Gaps = 3/168 (1%)

Query: 2   LRSLDGDEASYRHLLHALRRLLVAYYGRRMADAARADVEDLVQETLLSLHAKRETYDRAR 61
           +R LDG+ A+Y+  L  L   L  +  +R+    + DVEDLVQE LL++H  R TY   +
Sbjct: 22  VRGLDGNAAAYQAFLSDLTGHLRGFLRKRLF-YLQDDVEDLVQEILLAVHNGRHTYRPDQ 80

Query: 62  PFTAWFFSIARYKLIDHYRGRGRRMFSEVELDETLE--AESSVDAVTARMDVERLLNELP 119
           P TAW  +IARYKL D +R R RR    + LD+ LE  A   V+   AR D+ +LL +LP
Sbjct: 81  PLTAWVHAIARYKLADFFRARSRREALHMPLDDELEIFATCDVEPAEARRDLSKLLEQLP 140

Query: 120 ERQRDLIRRVKLEGQSIAEAAEKSGQTELAARVGIHRTLKVLAAKLRG 167
           +RQR  I  VKLEG S+ E A+ +G +E A +VG+HR LK LA K +G
Sbjct: 141 DRQRLPILHVKLEGLSVTETAKLTGLSESAVKVGVHRGLKALALKFQG 188