Pairwise Alignments

Query, 169 a.a., ECF family sigma factor from Agrobacterium fabrum C58

Subject, 181 a.a., RNA polymerase sigma factor from Burkholderia phytofirmans PsJN

 Score =  126 bits (316), Expect = 2e-34
 Identities = 77/168 (45%), Positives = 100/168 (59%), Gaps = 3/168 (1%)

Query: 1   MLRSLDGDEASYRHLLHALRRLLVAYYGRRMADAARADVEDLVQETLLSLHAKRETYDRA 60
           ++  L G+ + YR  L  L R L  Y  +R+      DVEDLVQE LL++H  R TY   
Sbjct: 12  LVAGLAGNASDYRLFLSELTRHLRGYLRKRIPQL-HDDVEDLVQEILLAVHNARHTYRPD 70

Query: 61  RPFTAWFFSIARYKLIDHYRGRGRRMFSEVELDE--TLEAESSVDAVTARMDVERLLNEL 118
            P TAW  +IARYKL+D +R R RR      LDE   + AE   +   AR DV +LL  L
Sbjct: 71  EPLTAWVHAIARYKLMDFFRTRARRESLHEPLDEHDDIFAECDDEPADARRDVGKLLGHL 130

Query: 119 PERQRDLIRRVKLEGQSIAEAAEKSGQTELAARVGIHRTLKVLAAKLR 166
           P++QR  I  VKL+G S+AEAA+ +G +E A +V IHR LK LAA +R
Sbjct: 131 PDKQRLSILHVKLQGLSVAEAAQLTGLSESAVKVSIHRGLKALAAHVR 178