Pairwise Alignments

Query, 169 a.a., ECF family sigma factor from Agrobacterium fabrum C58

Subject, 199 a.a., RNA polymerase sigma factor RpoE from Burkholderia phytofirmans PsJN

 Score = 51.6 bits (122), Expect = 8e-12
 Identities = 48/175 (27%), Positives = 72/175 (41%), Gaps = 18/175 (10%)

Query: 7   GDEASYRHLLHALRRLLVAYYGRRMADAARADVEDLVQETLLSLHAKRETYDRARPFTAW 66
           GD+A++  L+    R ++    R + D A  +VED+ Q+  +  +     +     F  W
Sbjct: 17  GDKAAFELLVSKYHRKILRLISRLVRDPA--EVEDVAQDAFIKAYRALPQFRGESAFYTW 74

Query: 67  FFSIARYKLIDHYRGRGRRMFSEVELDETLEAESSVDAVTAR---------------MDV 111
            + IA     ++   +GRR  +  E D   EAE+  DA   R                 V
Sbjct: 75  LYRIAVNTAKNYLATQGRRAPTSTEADAE-EAETFSDADQLRDINTPESMLMSKQIAETV 133

Query: 112 ERLLNELPERQRDLIRRVKLEGQSIAEAAEKSGQTELAARVGIHRTLKVLAAKLR 166
              +  LPE  R  I   ++EG S  E AE  G      R  I R  + +AAKLR
Sbjct: 134 NAAMAVLPEELRTAITLREIEGLSYEEIAEMMGCPIGTVRSRIFRAREAIAAKLR 188