Pairwise Alignments

Query, 616 a.a., ABC transporter, nucleotide binding/ATPase protein from Agrobacterium fabrum C58

Subject, 601 a.a., ABC transporter, ATP-binding protein MsbA (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  241 bits (616), Expect = 5e-68
 Identities = 190/611 (31%), Positives = 320/611 (52%), Gaps = 51/611 (8%)

Query: 23  TLLSFIWHYVKPAWPWLLL--LGLMSMGIAIAEAMLYKFLGNIVD--WLSTA----NRET 74
           T+   +  Y+KP     LL  +GL+  G+   +A    F+G  +D  + S+A    N   
Sbjct: 11  TVFKRLMGYLKPMKGMFLLSVVGLIVYGLV--DAAFISFIGPFIDKGFSSSAPAISNGIA 68

Query: 75  FFADEGWH----LIVMAGLVLFLL-PLMGAIHTMTMH--QTLAGNFGMIARWKMHRFLLR 127
               +G+H    +++MA +V+ L+  L G  + ++ +    ++    M  R ++    L 
Sbjct: 69  LPTSQGFHADNQVLLMAPIVVILMFSLRGFANFVSTYGISYMSARLIMDMRQQVFEHYLS 128

Query: 128 HSMNFFANEFAGRVSTKVMQTALAIREVALKVIDVFVYAISFVVSMLFMVAAADWRLVIP 187
             +++   E  G + +KV      I   +   +   V     ++ ML ++    W+L + 
Sbjct: 129 LPVSYMDKENTGNLISKVTFDTEQIARASGSALISIVRDSVTIIGMLGLMFYNSWKLSLC 188

Query: 188 LLIW---LGIYMAILAYFVPKLGRLAQEQADARSMMTGRIVDSYTNISTIKLFSHAGREE 244
           +L+    +G+ + I++    K+ +  Q      S  T +++  + N+      +  G+E 
Sbjct: 189 ILVIGPIMGVVITIVSRRFRKVSKQIQTAMGDVSAATEQMIKGHKNV-----LAFGGQET 243

Query: 245 RYAREGMNVFLGTVHRQMRKISGFNILIDLNNAVVLFSTATLGLYFW----MQGSVTAGS 300
             AR    +     H+ M+      +   L   +  F+ A + LY      M+  +TAG+
Sbjct: 244 ETARFA-KINDRNRHQNMKLAVAQAVSQPLIMVIGSFALAFV-LYAASLDSMKADLTAGT 301

Query: 301 VAIAISLAMRVNGMSQWIMWEVTSLFENIGTVYDGMSMMTKPHDIVD-VPKAPE----LA 355
            A  +   M +       +  + +L         G++  T   +++D VP++      +A
Sbjct: 302 FATILGAMMAM-------LQPIKNLTRVNAEFQRGIAACTTVFELLDTVPESDTGTYTVA 354

Query: 356 APQGAIHYDNVRFHY-GKNKGVIDGLTLDIKPGEKVGLVGRSGAGKTTLMNLLLRFYD-L 413
             +G + +DNV F Y G+ +  ++ +  ++  G+ + LVGRSG+GK+T+ +L+ RFY  L
Sbjct: 355 RAKGNLRFDNVSFSYEGQERRALEKIDFEVSQGQTLALVGRSGSGKSTIASLVTRFYTGL 414

Query: 414 EGGRITIDGQDISKVSQDSLRELIGVVTQDTSLLHRSIRDNIAYGHP-EATDEQVIAAAK 472
           E G I +D   I   S  SLR  + +V+Q  +L + +I +NIAY +P E T EQ+I AA 
Sbjct: 415 ESGDILLDDVSIYDYSLKSLRSQVALVSQQVTLFNDTIANNIAYAYPGEVTREQIIEAAT 474

Query: 473 RANAWDFIETLVDMHGRQGLDAQVGERGVKLSGGQRQRIAIARVFLKNAPILVLDEATSA 532
            A+A +FIE L D     GLD QVGE GV LSGGQRQRIAIAR  L++AP+L+LDEATSA
Sbjct: 475 LAHAMEFIEQLPD-----GLDTQVGENGVLLSGGQRQRIAIARAMLRDAPVLILDEATSA 529

Query: 533 LDSEVEAAIQENLFSLMEGKTVIAIAHRLSTLTEMDRLIILDKGRIVEAGSHAELAAMGG 592
           LD+E E AIQ+ L +L + +T + IAHRLST+   D+++++D+GRIVE G+H  L  +GG
Sbjct: 530 LDTESEKAIQQGLDNLRQNRTSVVIAHRLSTIESADQILVVDQGRIVERGTHKSLLELGG 589

Query: 593 IYADLWRRQSG 603
           +YA L++ Q G
Sbjct: 590 MYAKLYQMQFG 600