Pairwise Alignments

Query, 319 a.a., transcriptional regulator from Agrobacterium fabrum C58

Subject, 587 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

 Score = 82.4 bits (202), Expect = 2e-20
 Identities = 55/185 (29%), Positives = 92/185 (49%), Gaps = 8/185 (4%)

Query: 26  IIASWRRCMVKHRLAPEENRKPIFLSEIEFRRARESAAGLI-AESTDELDRIFHSVGKSG 84
           ++ SW+R   +  L  +   + I LS+ + +  R+  AGLI   S   L   +     S 
Sbjct: 13  LVNSWQRSE-QAGLTQQSRAQDIRLSDNKLKERRQELAGLIDTVSRFALPLFYQLFAHSD 71

Query: 85  CCLLLTDAQGVALERRGASGDDRDFRALGLWNGAVWSEESVGTNGIGTALVDERSVVVYR 144
             L+LTD  GV +   G +        + L +GA W E   GTN IGTAL++++ + V  
Sbjct: 72  SRLILTDQHGVIIGSWGQARFREKLSQIALSSGACWQEPIKGTNAIGTALIEQKPISVIG 131

Query: 145 DQHFFTSNTELCCTTAPIRDHTGRVTGALDISTCRDDINEMTFSFVTQ-AVKDAAQRIEG 203
           +QHF   +  + C+ +PI D+TG++ G LDI++      +   +  TQ  V++  Q +E 
Sbjct: 132 EQHFIQHHHFISCSASPIFDYTGQLIGVLDITS-----EQQKHTLSTQVVVQNMVQLVEN 186

Query: 204 NLFRR 208
            L  +
Sbjct: 187 QLLNQ 191



 Score = 38.1 bits (87), Expect = 5e-07
 Identities = 16/48 (33%), Positives = 28/48 (58%)

Query: 271 DGGSDLAEAERSALRRVLSRTNGNVTQAASLLGISRATLHRKMKKFDV 318
           D   D+     ++L +    T GN++Q + LLG+SR T++RK+K   +
Sbjct: 538 DQQKDIKSTVEASLLKTYQATQGNISQTSRLLGLSRNTIYRKLKALGI 585