Pairwise Alignments

Query, 319 a.a., transcriptional regulator from Agrobacterium fabrum C58

Subject, 653 a.a., Sigma54 Specific Transcriptional Regulator containing GAF, and Fis DNA-binding domains (NCBI) from Rhodospirillum rubrum S1H

 Score = 94.0 bits (232), Expect = 9e-24
 Identities = 87/283 (30%), Positives = 118/283 (41%), Gaps = 17/283 (6%)

Query: 3   TDIAHAERVYETARHRSAAASSPIIA-SWRRCMVKHRLAPEENRKPIFLSEIEFRRARES 61
           T +  A  + E      A   +P +A SW R +    L          L+     +A E 
Sbjct: 10  TALRRARHLLEGGSLPPAGLIAPTVAHSWERSLRAGLLPFSPPAVADHLAARHLAQAVER 69

Query: 62  AAGLIAESTDELDRIFHSVGKSGCCLLLTDAQGVALERRGASGDDRDFRALGLWNGAVWS 121
              L+  +   +D +      S   ++L D  GV +E  G +        + L  GA W 
Sbjct: 70  RRELLMRARPVMDYLHAQTKGSDSVVILADDNGVLIEALGDAAFVERAERVALKPGASWH 129

Query: 122 EESVGTNGIGTALVDERSVVVYRDQHFFTSNTELCCTTAPIRDHTGRVTGALDISTCRDD 181
           E   GTN IGTALV+ + V V+  +HFF  N  L C  API    GRV G LDIS  +  
Sbjct: 130 ERHRGTNAIGTALVEAQPVAVHGGEHFFEHNRFLTCAAAPIAGPDGRVLGVLDISGPQRG 189

Query: 182 INEMTFSFVTQAVKDAAQRIEGNLFRRAFPGA-RIVVVPTGFG---AAMSLLAVDQDDLV 237
            +  TF      V+ A   IE  LF     G  RI   P   G    A  ++A+ ++ LV
Sbjct: 190 RHPHTFGL----VRAATHMIENKLFEARHEGEYRIRFHPQADGIGTLAEGMVALSEEGLV 245

Query: 238 LGATRAARLALKLDDIRIAQG-------LPAADILQE-QRHDG 272
           +GA RAA   L +    I +        L  ADIL    RH G
Sbjct: 246 IGANRAALAFLAITPSDIGKALIEALLPLRMADILDHGHRHPG 288



 Score = 38.9 bits (89), Expect = 3e-07
 Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 9/71 (12%)

Query: 252 DIRIAQGLPAADILQEQRHDGGSD---------LAEAERSALRRVLSRTNGNVTQAASLL 302
           +IR+       D+++E R   G D         L  A  S + R+++ + GN+++AA  L
Sbjct: 563 EIRLGWHHLPEDLIEELRCPSGVDTDAGAGPATLRAASDSLIERMVAASGGNLSEAARRL 622

Query: 303 GISRATLHRKM 313
           GISR TL+R+M
Sbjct: 623 GISRNTLYRRM 633