Pairwise Alignments

Query, 401 a.a., carbamoylphosphate synthase small chain from Agrobacterium fabrum C58

Subject, 390 a.a., carbamoyl phosphate synthase small subunit (RefSeq) from Shewanella loihica PV-4

 Score =  362 bits (930), Expect = e-105
 Identities = 198/385 (51%), Positives = 243/385 (63%), Gaps = 9/385 (2%)

Query: 13  TAMLVLADGTVIEGTGIGATGKVQAEVCFNTALTGYEEILTDPSYLGQIVTFTFPHIGNV 72
           +A+LVL DGTV  GT IGA G    EV FNT++TGY+EILTDPSY  QIVT T+PHIGN 
Sbjct: 13  SALLVLEDGTVFSGTAIGADGLAVGEVVFNTSMTGYQEILTDPSYSRQIVTLTYPHIGNT 72

Query: 73  GTNEEDIEDLTPAARRGAVGVIFKADITDPSNFRAVKHLDAWLKARGVIGLCGIDTRALT 132
           GTN ED E    +    A G+I +      SNFR  + L  +LK+  V+G+  IDTR LT
Sbjct: 73  GTNSEDTE----SEAVHACGLIIRDLPLLASNFRNEQSLSDYLKSNNVVGIADIDTRKLT 128

Query: 133 AWIRENGAPNAVIAHDPNGVFDIEALKAEAKAWSGLVGLDLAIEATSGQSSTWTETPWVW 192
             +RE GA    I     G  D     A AKA+ GL G+DLA E T+ +   W    W  
Sbjct: 129 RILREKGAQAGAILV---GDMDEAKALAAAKAFPGLKGMDLAKEVTTQKQYQWRSGSWRL 185

Query: 193 NKGYGT-LGEADAKYHVVCVDFGVKRNILRLFAGLDCKVTVVPAQTSAEDILALKPDGVF 251
             G  +   E++ KY VV  D+GVKRNILR+     C VTVVPAQT A ++LA+ PDG+F
Sbjct: 186 VGGLPSDTPESELKYKVVAYDYGVKRNILRMLVDRGCDVTVVPAQTPAAEVLAMNPDGIF 245

Query: 252 LSNGPGDPAATGEYAVPVIQNLIKSELPIFGICLGHQMLGLAVGAKTEKMHQGHHGANHP 311
           LSNGPGDP    +YA+  IQ  +K+++P+FGICLGHQ+L LA GAKT KM  GHHGANHP
Sbjct: 246 LSNGPGDPEPC-DYAIEAIQAFLKTDIPLFGICLGHQLLALASGAKTLKMKFGHHGANHP 304

Query: 312 VKDFTTGKVEIVSMNHGFAVDTKSLPEGVEETHTSLFDGTNCGLRIVGKPVFSVQHHPEA 371
           V +   G V I S NHGFA D  SLP  V+ TH SLFDG+  G+ +  KP FS Q HPEA
Sbjct: 305 VSNLEKGNVMITSQNHGFAADETSLPANVKVTHKSLFDGSLQGIHLTDKPAFSFQGHPEA 364

Query: 372 SPGPQDSHYLFRRFVNLLRENKGEA 396
           SPGP D+  LF  F+ L+ E +  A
Sbjct: 365 SPGPHDAAPLFDHFIELIEEYRHNA 389