Pairwise Alignments

Query, 684 a.a., RNA polymerase sigma factor RpoD from Agrobacterium fabrum C58

Subject, 615 a.a., RNA polymerase sigma factor RpoD from Pseudomonas fluorescens FW300-N2E2

 Score =  533 bits (1372), Expect = e-155
 Identities = 321/658 (48%), Positives = 408/658 (62%), Gaps = 59/658 (8%)

Query: 31  VKKMIKAAKKRGYVTMDELNSVLPSEEVTSEQIEDTMAMLSDMGINVIE---DEDAEEAA 87
           +K++I   +++GY+T  E+N  LP +    EQ+ED + M++DMGINV E   D+DA   A
Sbjct: 11  IKELILLGREQGYLTYAEVNDHLPEDISDPEQVEDIIRMINDMGINVFEVAPDKDALMLA 70

Query: 88  PAEDDGDSDNEESEGGELAPSGGTALATAKKKEPTDRTDDPVRMYLREMGSVELLSREGE 147
                 D+D +E+   E       A A A  +    RT DPVRMY+REMG+VELL+REGE
Sbjct: 71  ------DADTDEAAAEE------AAAALAAVETDIGRTTDPVRMYMREMGTVELLTREGE 118

Query: 148 IAIAKRIEAGRETMISGLCESPLTFQALIIWRDELNEGTTLLREIIDLETTYSGPE-AKA 206
           I IAKRIE G   ++  +   P T   ++    E    TT    + D+ + Y  P+   A
Sbjct: 119 IEIAKRIEEGIREVMGAIAHFPGTVDHIL---SEYTRVTTEGGRLSDVLSGYIDPDDGIA 175

Query: 207 APQFQSPEKIEADRKAAEEKEKTRRLRAPTGDEDVTDVGGDGLPPEEEEEDDDESNLSLA 266
            P  + P  I+A              +A   D+D  D   +    EEE E   +  ++  
Sbjct: 176 PPAAEVPPPIDA--------------KAVKADDDTDDDDAEASDDEEEAESGPDPIIAAQ 221

Query: 267 AMEAELRPQVMETLDTIADTYKKLRKLQDQQVEARLACTGTLSSGQERRYKELKDQLITA 326
              A     V + ++      KK  +   Q +   LA                  +L   
Sbjct: 222 RFGA-----VADQMEITRKALKKHGRNNKQAIAELLALA----------------ELFMP 260

Query: 327 VKSLSLNQNRIDSLVEQLYDISKRLMQNEGRLLRLA-ESYGVKRDSFLEQYHGAELDPNW 385
           +K   L   + + LVE++     RL Q E  +++L      + R  FL Q+ G E+D +W
Sbjct: 261 IK---LVPKQFEGLVERVRSALDRLRQQERAIMQLCVRDARMPRADFLRQFPGNEVDESW 317

Query: 386 MKSITNLAARGWKEFAREESNTIREIRQEIQNLSTETGISIAEFRRIVSMVQKGEREARI 445
             ++    ++  +  AR + + +R  +Q++  L  ETG+SIAE + I   +  GE +AR 
Sbjct: 318 TDALAKGKSKYAEAIARLQPDIVR-CQQKLSALEAETGLSIAEIKDINRRMSIGEAKARR 376

Query: 446 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 505
           AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW
Sbjct: 377 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 436

Query: 506 IRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLAMPLEKV 565
           IRQAITRSIADQARTIRIPVHMIETINK+ R SRQML E+GREPTPEEL E++ MP +K+
Sbjct: 437 IRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELGERMEMPEDKI 496

Query: 566 RKVLKIAKEPISLETPVGDEEDSHLGDFIEDKNALLPIDAAIQANLRETTTRVLASLTPR 625
           RKVLKIAKEPIS+ETP+GD+EDSHLGDFIED     PID A   +L+E T  VL+ LT R
Sbjct: 497 RKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPIDVATVESLKEATREVLSGLTAR 556

Query: 626 EERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD 683
           E +VLRMRFGI MNTDHTLEEVG+QF VTRERIRQIEAKALRKL+HP+RS  LRSFLD
Sbjct: 557 EAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSEHLRSFLD 614