Pairwise Alignments

Query, 684 a.a., RNA polymerase sigma factor RpoD from Agrobacterium fabrum C58

Subject, 615 a.a., RNA polymerase subunit sigma-70 from Pseudomonas fluorescens FW300-N2E3

 Score =  530 bits (1364), Expect = e-154
 Identities = 317/657 (48%), Positives = 404/657 (61%), Gaps = 57/657 (8%)

Query: 31  VKKMIKAAKKRGYVTMDELNSVLPSEEVTSEQIEDTMAMLSDMGINVIEDEDAEEAAPAE 90
           +K++I   +++GY+T  E+N  LP +    EQ+ED + M++DMGINV E       AP +
Sbjct: 11  IKELITLGREQGYLTYAEVNDHLPEDISDPEQVEDIIRMINDMGINVFE------VAPDK 64

Query: 91  DD---GDSDNEESEGGELAPSGGTALATAKKKEPTDRTDDPVRMYLREMGSVELLSREGE 147
           D     D+D +E+   E       A A A  +    RT DPVRMY+REMG+VELL+REGE
Sbjct: 65  DSLMLADADTDEAAAEE------AAAALAAVETDIGRTTDPVRMYMREMGTVELLTREGE 118

Query: 148 IAIAKRIEAGRETMISGLCESPLTFQALIIWRDELNEGTTLLREIIDLETTYSGPEAKAA 207
           I IAKRIE G   ++  +   P T   ++    E    TT    + D+ + Y  P+   A
Sbjct: 119 IEIAKRIEEGIREVMGAIAHFPGTVDHIL---SEYTRVTTEGGRLSDVLSGYIDPDDGIA 175

Query: 208 PQFQSPEKIEADRKAAEEKEKTRRLRAPTGDEDVTDVGGDGLPPEEEEEDDDESNLSLAA 267
           P              A E       +A   D+D  D   +    EEE E   +  ++   
Sbjct: 176 PP-------------AAEVPPPVDPKAVKADDDTDDDDAEASDDEEEAESGPDPVIAAQR 222

Query: 268 MEAELRPQVMETLDTIADTYKKLRKLQDQQVEARLACTGTLSSGQERRYKELKDQLITAV 327
             A     V + ++      KK  +   Q +   LA                  +L   +
Sbjct: 223 FGA-----VADQMEITRKALKKHGRENKQAIAEMLALA----------------ELFMPI 261

Query: 328 KSLSLNQNRIDSLVEQLYDISKRLMQNEGRLLRLA-ESYGVKRDSFLEQYHGAELDPNWM 386
           K   L   + + LVE++     RL Q E  +++L      + R  FL Q+ G E+D +W 
Sbjct: 262 K---LVPKQFEGLVERVRSALDRLRQQERAIMQLCVRDARMPRADFLRQFPGNEVDESWT 318

Query: 387 KSITNLAARGWKEFAREESNTIREIRQEIQNLSTETGISIAEFRRIVSMVQKGEREARIA 446
           +++    ++  +   R +++ +R  +Q++  L  ETG+ IAE + I   +  GE +AR A
Sbjct: 319 EALAKGKSKYAEAIGRLQADIVR-CQQKLTALEAETGLKIAEIKDINRRMSIGEAKARRA 377

Query: 447 KKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWI 506
           KKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWI
Sbjct: 378 KKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWI 437

Query: 507 RQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLAMPLEKVR 566
           RQAITRSIADQARTIRIPVHMIETINK+ R SRQML E+GREPTPEEL E++ MP +K+R
Sbjct: 438 RQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELGERMEMPEDKIR 497

Query: 567 KVLKIAKEPISLETPVGDEEDSHLGDFIEDKNALLPIDAAIQANLRETTTRVLASLTPRE 626
           KVLKIAKEPIS+ETP+GD+EDSHLGDFIED     PID A   +L+E T  VL+ LT RE
Sbjct: 498 KVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPIDVATVESLKEATREVLSGLTARE 557

Query: 627 ERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD 683
            +VLRMRFGI MNTDHTLEEVG+QF VTRERIRQIEAKALRKL+HP+RS  LRSFLD
Sbjct: 558 AKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSEHLRSFLD 614