Pairwise Alignments

Query, 684 a.a., RNA polymerase sigma factor RpoD from Agrobacterium fabrum C58

Subject, 615 a.a., RNA polymerase sigma factor RpoD from Pseudomonas fluorescens FW300-N1B4

 Score =  528 bits (1360), Expect = e-154
 Identities = 320/657 (48%), Positives = 402/657 (61%), Gaps = 57/657 (8%)

Query: 31  VKKMIKAAKKRGYVTMDELNSVLPSEEVTSEQIEDTMAMLSDMGINVIEDEDAEEAAPAE 90
           +K++I   +++GY+T  E+N  LP +    EQ+ED + M++DMGINV E       AP +
Sbjct: 11  IKELITLGREQGYLTYAEVNDHLPEDISDPEQVEDIIRMINDMGINVFE------VAPDK 64

Query: 91  DD---GDSDNEESEGGELAPSGGTALATAKKKEPTDRTDDPVRMYLREMGSVELLSREGE 147
           D     D+D +E+   E       A A A  +    RT DPVRMY+REMG+VELL+REGE
Sbjct: 65  DSLMLADADTDEAAAEE------AAAALAAVETDIGRTTDPVRMYMREMGTVELLTREGE 118

Query: 148 IAIAKRIEAGRETMISGLCESPLTFQALIIWRDELNEGTTLLREIIDLETTYSGPEAKAA 207
           I IAKRIE G   ++  +   P T   ++    E    TT    + D+ + Y  P+   A
Sbjct: 119 IEIAKRIEEGIREVMGAIAHFPGTVDHIL---SEYTRVTTEGGRLSDVLSGYIDPDDGIA 175

Query: 208 PQFQSPEKIEADRKAAEEKEKTRRLRAPTGDEDVTDVGGDGLPPEEEEEDDDESNLSLAA 267
           P              A E       +A   D+D  D   +    EEE E   +  ++   
Sbjct: 176 PP-------------AAEVPPPVDPKAVKADDDTDDDDAEASDDEEEAESGPDPVIAAQR 222

Query: 268 MEAELRPQVMETLDTIADTYKKLRKLQDQQVEARLACTGTLSSGQERRYKELKDQLITAV 327
             A          D +  T K L+K                  G +    EL   L    
Sbjct: 223 FGA--------VADQMEITRKALKKH---------------GRGNKLAIAELI-ALAELF 258

Query: 328 KSLSLNQNRIDSLVEQLYDISKRLMQNEGRLLRLA-ESYGVKRDSFLEQYHGAELDPNWM 386
             + L   + + LVE++     RL Q E  +++L      + R  FL Q+ G E+D +W 
Sbjct: 259 MPIKLVPKQFEGLVERVRSALDRLRQQERAIMQLCVRDARMPRADFLRQFPGNEVDESWT 318

Query: 387 KSITNLAARGWKEFAREESNTIREIRQEIQNLSTETGISIAEFRRIVSMVQKGEREARIA 446
            ++    ++  +   R + + IR  +Q++  L TETG++IAE + I   +  GE +AR A
Sbjct: 319 DALAKGKSKYAEAIGRLQPDIIR-CQQKLTALETETGLTIAEIKDINRRMSIGEAKARRA 377

Query: 447 KKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWI 506
           KKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWI
Sbjct: 378 KKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWI 437

Query: 507 RQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLAMPLEKVR 566
           RQAITRSIADQARTIRIPVHMIETINK+ R SRQML E+GREPTPEEL E++ MP +K+R
Sbjct: 438 RQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELGERMEMPEDKIR 497

Query: 567 KVLKIAKEPISLETPVGDEEDSHLGDFIEDKNALLPIDAAIQANLRETTTRVLASLTPRE 626
           KVLKIAKEPIS+ETP+GD+EDSHLGDFIED     PID A   +L+E T  VL+ LT RE
Sbjct: 498 KVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPIDVATVESLKEATREVLSGLTARE 557

Query: 627 ERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD 683
            +VLRMRFGI MNTDHTLEEVG+QF VTRERIRQIEAKALRKL+HP+RS  LRSFLD
Sbjct: 558 AKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSEHLRSFLD 614