Pairwise Alignments

Query, 684 a.a., RNA polymerase sigma factor RpoD from Agrobacterium fabrum C58

Subject, 793 a.a., RNA polymerase sigma factor RpoD from Acidovorax sp. GW101-3H11

 Score =  514 bits (1323), Expect = e-150
 Identities = 304/655 (46%), Positives = 405/655 (61%), Gaps = 55/655 (8%)

Query: 31  VKKMIKAAKKRGYVTMDELNSVLPSEEVTSEQIEDTMAMLSDMGINVIEDEDAEEAAPAE 90
           +K +IK  K RGY+T  E+N  LP + V +E +E  +  L+D+G+ V E     EA    
Sbjct: 192 LKALIKLGKTRGYLTHVEINDHLPDKLVDAETLEAVITTLNDLGVAVYEQTPDAEALIIT 251

Query: 91  DDGDSDNEESEGGELAPSGGTALATAKKKEPTDRTDDPVRMYLREMGSVELLSREGEIAI 150
           D+  +   E E  E A +   AL+T   +    RT DPVRMY+REMG+VELL+REGEI I
Sbjct: 252 DNAPAGATEEEAEEAAEA---ALSTVDSE--FGRTTDPVRMYMREMGTVELLTREGEIEI 306

Query: 151 AKRIEAGRETMISGLCESPLTFQALIIWRDELNEGTTLLREIIDLETTYSGPEAKAAPQF 210
           AKRIE G   M+  +  SP T   ++   +E+ EG  ++  I+D               F
Sbjct: 307 AKRIEGGLMAMMEAISASPATIAEILNMGEEIREGKVVISTIVD--------------GF 352

Query: 211 QSPEKIEADRKAAEEKEKTRRLRAPTGDEDVTDVGGDGLPPEEEEEDDDESNLSLAAMEA 270
            +P   EAD   AEE            D D  D        E +++D    + +L     
Sbjct: 353 SNPN--EADDYVAEE------------DFDEFD--------EADDDDGKGGSKALTKKLE 390

Query: 271 ELRPQVMETLDTIADTYKKLRKLQDQQVEARLACTGTLSSGQERRYKELKDQLITAVKSL 330
           EL+ Q +E  D + + ++K+ K+ D++        G  +    +    L  +L+T   + 
Sbjct: 391 ELKKQALERFDKLRELFEKVHKVYDKE--------GYGTPAYIKAQAALSAELMTIRFTA 442

Query: 331 SLNQNRIDSLVEQLYDISKRLMQNEGRLLRL-AESYGVKRDSFLEQYHGAELDPNWMKSI 389
              +   D +  Q+ D+ K+    E  L R+  +  G+ +++F++ +    L+  W++  
Sbjct: 443 KTIEKLCDMVRGQVDDVRKK----ERELRRIIVDKCGMPQETFIKDFPPNLLNLQWVEKQ 498

Query: 390 TNLAARGWKEFAREESNTIREIRQEIQNLSTETGISIAEFRRIVSMVQKGEREARIAKKE 449
              A + W          I++++Q++ +L +   + +AE + I   + +GE  +R AKKE
Sbjct: 499 A-AAGKPWSAVIARNIPPIQDLQQKLMDLQSRVVVPLAELKGINKRMNEGEATSRDAKKE 557

Query: 450 MVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQA 509
           M+EANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQA
Sbjct: 558 MIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQA 617

Query: 510 ITRSIADQARTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLAMPLEKVRKVL 569
           ITRSIADQARTIRIPVHMIETINK+ R SRQ L E G EP    LA K+ +P +K+RK++
Sbjct: 618 ITRSIADQARTIRIPVHMIETINKMNRISRQHLQEFGFEPDASILAAKMEIPEDKIRKIM 677

Query: 570 KIAKEPISLETPVGDEEDSHLGDFIEDKNALLPIDAAIQANLRETTTRVLASLTPREERV 629
           KIAKEPIS+ETP+GD++DSHLGDFIED     PI+AA+QA LR+    +L  LTPRE +V
Sbjct: 678 KIAKEPISMETPIGDDDDSHLGDFIEDGANTAPIEAAMQAGLRDVVKDILDGLTPREAKV 737

Query: 630 LRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLDS 684
           LRMRFGI M +DHTLEEVG+QF VTRERIRQIEAKALRKLKHPSRS KLRSF+DS
Sbjct: 738 LRMRFGIEMTSDHTLEEVGKQFDVTRERIRQIEAKALRKLKHPSRSDKLRSFIDS 792