Pairwise Alignments

Query, 684 a.a., RNA polymerase sigma factor RpoD from Agrobacterium fabrum C58

Subject, 624 a.a., RNA polymerase sigma factor RpoD from Xanthomonas campestris pv. campestris strain 8004

 Score =  514 bits (1324), Expect = e-150
 Identities = 310/655 (47%), Positives = 399/655 (60%), Gaps = 46/655 (7%)

Query: 31  VKKMIKAAKKRGYVTMDELNSVLPSEEVTSEQIEDTMAMLSDMGINVIE-DEDAEEAAPA 89
           +K +I    ++GY+T  E+N  LP + V  EQIED ++M++ MGI+V E   DAE     
Sbjct: 12  IKLLISKGLEQGYLTYAEVNDHLPDDLVDPEQIEDIISMINGMGIDVHEVAPDAETLLL- 70

Query: 90  EDDGDSDNEESEGGELAPSGGTALATAKKKEPTDRTDDPVRMYLREMGSVELLSREGEIA 149
            +DG++ N E +  + A     A  TA   E   RT DPVRMY+REMG+VELL+REGEIA
Sbjct: 71  -NDGNTGNREVD--DTAAEEAAAALTALDTEG-GRTTDPVRMYMREMGTVELLTREGEIA 126

Query: 150 IAKRIEAGRETMISGLCESPLTFQALIIWRDELNEGTTLLREIIDLETTYSGPEAKAAPQ 209
           IAKRIE G   + + L   PL+ + L+   +   EG   L EI+                
Sbjct: 127 IAKRIEEGLSQVQAALGTFPLSTELLLSDYEAHKEGKKRLAEIV---------------- 170

Query: 210 FQSPEKIEADRKAAEEKEKTRRLRAPTGDEDVTDVGGDGLPPEEEEEDDDESNLSLAAME 269
                         EE +      A  G   V +   D +  + +E+ DD++    A   
Sbjct: 171 -------VGFNDLIEEADAAAAALAAAGPVAVDE---DAVDEDADEDGDDDAAEEEAGPT 220

Query: 270 AELRPQVMETLDTIADTYKKLRKLQDQQVEARLACTGTLSSGQERRYKELKDQLITAVKS 329
                +V   ++ +A+ Y K +K   +               + +   + ++ +     +
Sbjct: 221 GPDPVEVATRMENLANEYAKFKKAYVKY------------GAEHKNVAKAREDMAAIFTT 268

Query: 330 LSLNQNRIDSLVEQLYDISKRLMQNEGRLLRLAESYG-VKRDSFLEQYHGAELDPNWMKS 388
           L L     D+LV QL  +   +  +E ++L LA +   + R  F+  + G + +  W++ 
Sbjct: 269 LKLPLPLTDALVTQLRGVVNGIKDHERKVLHLATTVARMPRKDFIRSWEGNQTNLEWVED 328

Query: 389 ITNLAARGWKEFAREESNTIREIRQEIQNLSTETGISIAEFRRIVSMVQKGEREARIAKK 448
                 + W    R+  + I   +Q    +     +++AE + I   +  GE +AR AKK
Sbjct: 329 ALKRKQK-WSSALRDVKDQIVSEQQGSIEMEKANYLTLAEIKDISRAMAYGEAKARKAKK 387

Query: 449 EMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQ 508
           EMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQ
Sbjct: 388 EMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQ 447

Query: 509 AITRSIADQARTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLAMPLEKVRKV 568
           AITRSIADQARTIRIPVHMIETINK+ R SRQML + GRE TPEELA+++ MP +K+RKV
Sbjct: 448 AITRSIADQARTIRIPVHMIETINKLNRISRQMLQQFGREATPEELAKEMDMPEDKIRKV 507

Query: 569 LKIAKEPISLETPVGDEEDSHLGDFIEDKNALLPIDAAIQANLRETTTRVLASLTPREER 628
           +KIAKEPIS+ETP+GD+EDSHLGDFIED N   PID     NL ET   VLA LTPRE +
Sbjct: 508 MKIAKEPISMETPIGDDEDSHLGDFIEDTNVESPIDNTTNINLSETVRDVLAGLTPREAK 567

Query: 629 VLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD 683
           VLRMRFGI MNTDHTLEEVG+QF VTRERIRQIEAKALRKL+HPSRS +LRSFLD
Sbjct: 568 VLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEQLRSFLD 622