Pairwise Alignments

Query, 684 a.a., RNA polymerase sigma factor RpoD from Agrobacterium fabrum C58

Subject, 399 a.a., RNA polymerase sigma factor RpoD from Synechococcus elongatus PCC 7942

 Score =  284 bits (727), Expect = 5e-81
 Identities = 142/239 (59%), Positives = 190/239 (79%), Gaps = 1/239 (0%)

Query: 444 RIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYAT 503
           R AK +MV++NLRLV+SIAKKY NRGL F DLIQEG++GL++A +KF++ +GYKFSTYAT
Sbjct: 161 RRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYAT 220

Query: 504 WWIRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLAMPLE 563
           WWIRQAITR+IADQ+RTIR+PVH+ ETI++I +T++ +  E+GR+PT EE+A ++ M +E
Sbjct: 221 WWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIE 280

Query: 564 KVRKVLKIAKEPISLETPVGDEEDSHLGDFIEDKNALLPIDAAIQANLRETTTRVLASLT 623
           K+R + K A+ PISLETP+G EEDS LGDFIE  +   P D   +  LRE    VL++L+
Sbjct: 281 KLRFIAKSAQLPISLETPIGKEEDSRLGDFIE-ADGETPEDEVAKNLLREDLEGVLSTLS 339

Query: 624 PREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFL 682
           PRE  VLR+R+G+      TLEE+GQ F+VTRERIRQIEAKALRKL+HP+R+  L+ ++
Sbjct: 340 PRERDVLRLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 398



 Score = 43.9 bits (102), Expect = 1e-08
 Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 5/74 (6%)

Query: 81  EDAEEAAPAEDDGDSDNEESEGGELAPSGGTALATAKKKEPTDRTDDPVRMYLREMGSVE 140
           E A   AP  D    D+E+S G +       A A AK K     T+D +R+YL+E+G + 
Sbjct: 48  EPATTIAPTADVDAIDDEDSVGED-----EDAAAKAKAKVRKTYTEDSIRLYLQEIGRIR 102

Query: 141 LLSREGEIAIAKRI 154
           LL  + EI +A++I
Sbjct: 103 LLRADEEIELARQI 116