Pairwise Alignments

Query, 684 a.a., RNA polymerase sigma factor RpoD from Agrobacterium fabrum C58

Subject, 620 a.a., RNA polymerase sigma-70 factor (RefSeq) from Shewanella amazonensis SB2B

 Score =  530 bits (1365), Expect = e-155
 Identities = 317/655 (48%), Positives = 413/655 (63%), Gaps = 49/655 (7%)

Query: 31  VKKMIKAAKKRGYVTMDELNSVLPSEEVTSEQIEDTMAMLSDMGINVIEDE-DAEEAAPA 89
           +K ++   K++GY+T  E+N  LP++ V S+QIED + M++DMGI V E+  DA+E   +
Sbjct: 12  LKMLLAKGKEQGYLTYAEVNDHLPADMVDSDQIEDIIQMINDMGIRVYEEAPDADEMMMS 71

Query: 90  EDDGDSDNEESEGGELAPSGGTALATAKKKEPTDRTDDPVRMYLREMGSVELLSREGEIA 149
           ED+ D D  E            ALAT + +    RT DPVRMY+REMG+VELL+REGEI 
Sbjct: 72  EDNTDEDAAEE--------AAAALATVESE--LGRTTDPVRMYMREMGTVELLTREGEIV 121

Query: 150 IAKRIEAGRETMISGLCESPLTFQALIIWRDELNEGTTLLREIIDLETTYSGPEAKAAPQ 209
           IAKRIE G  T+ S + E P     ++   D+       L +II      SG        
Sbjct: 122 IAKRIEEGINTVQSSVAEYPQAISMILEQFDQFEADAIRLSDII------SG-------- 167

Query: 210 FQSPEKIEADRKAAEEKEKTRRLRAPTGDEDVTDVGGDGLPPEEEEEDDDESNLSLAAME 269
           F  P + +    A         + +   +E++ D   D +  +EEE++D +S+    A  
Sbjct: 168 FVDPNEEDVGPTATH-------IGSELSEEELEDE--DDMDEDEEEDEDGDSSDDDGAKG 218

Query: 270 AELRPQVMETLDTIADTYKKLRKLQDQQVEARLACTGTLSSGQERRYKELKDQLITAVKS 329
            +  P+V        + +  LR   D  ++  +   G       R   EL +      K 
Sbjct: 219 PD--PEVAR------ERFAALRAAYDNALKV-IEVKGRAHPESTRALFELGE----IFKE 265

Query: 330 LSLNQNRIDSLVEQLYDISKRLMQNEGRLLRLA-ESYGVKRDSFLEQYHGAELDPNWMKS 388
             L   + D LV+ + ++  ++   E  +++L  E   + + +F++ + G E D  W   
Sbjct: 266 FRLVPKQFDRLVKSMREMMDKVRVQERLIMKLCVEQAKMPKKNFVKLFTGNETDLTWFNK 325

Query: 389 ITNLAARGWKEFAREESNTIREIRQEIQNLSTETGISIAEFRRIVSMVQKGEREARIAKK 448
               A R +    +     ++  R +++ +  ETG+SI   + I   +  GE +AR AKK
Sbjct: 326 EIE-AGRPYSADLKLVDEDVQRCRAKLEAIEVETGLSIESIKDINRRMSIGEAKARRAKK 384

Query: 449 EMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQ 508
           EMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQ
Sbjct: 385 EMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQ 444

Query: 509 AITRSIADQARTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLAMPLEKVRKV 568
           AITRSIADQARTIRIPVHMIETINK+ R SRQML E+GREP+PEELAE++AMP +K+RKV
Sbjct: 445 AITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPSPEELAERMAMPEDKIRKV 504

Query: 569 LKIAKEPISLETPVGDEEDSHLGDFIEDKNALLPIDAAIQANLRETTTRVLASLTPREER 628
           LKIAKEPIS+ETP+GD+EDSHLGDFIED    LP+D+A   +L++ T  VLA LT RE +
Sbjct: 505 LKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATSESLKQATHEVLAGLTAREAK 564

Query: 629 VLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD 683
           VLRMRFGI MNTDHTLEEVG+QF VTRERIRQIEAKALRKL+HPSRS  L+SFLD
Sbjct: 565 VLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEILKSFLD 619