Pairwise Alignments

Query, 684 a.a., RNA polymerase sigma factor RpoD from Agrobacterium fabrum C58

Subject, 969 a.a., DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)-like protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  263 bits (673), Expect = 2e-74
 Identities = 198/565 (35%), Positives = 288/565 (50%), Gaps = 91/565 (16%)

Query: 126 DDPVRMYLREMGSVELLSREGEIAIAKRIEAGRETMISGLCESPLTFQALIIWRDELNEG 185
           D+P+  Y   +   ELL+RE E+    R EA R  ++  L E P   + L     E    
Sbjct: 479 DEPMGYYFASLPGKELLTREQEVDNGMRREAARLAIMEALSEVPFICELLAHLCQEA--- 535

Query: 186 TTLLREIIDLETTYSGPEAKAAPQFQSPEKIEADRKAAEEKEKTRRLRAPTGDEDVTDVG 245
              LRE          PE       QS +K+ A+      ++     RA +   D     
Sbjct: 536 ---LRE--------HNPE-------QSLQKVVAELNTLPSEDFVEIKRAVSLFMD----- 572

Query: 246 GDGLPPEEEEEDDDESNLSLAAMEAELRPQVMETLDTIADTYKKLRKLQDQQVEARLACT 305
                   E+ED DE                    D   DTY           EA +   
Sbjct: 573 --------EQEDGDEP-------------------DDFVDTYP---------YEAIVGAL 596

Query: 306 GT-LSSGQERRYKELKDQLITAVKSLSLNQNRIDSLVEQLY-------DISKRLMQNEGR 357
            T L+   E  +  ++D      +S+ L ++ ++ L++ LY       DI   L+    R
Sbjct: 597 KTFLNVSGESEHPGVQDTF----RSIVLTEDALNILIKALYESIDKVSDIKTELVNLYTR 652

Query: 358 LLRLAESYGVKRDSFLEQYHGAELDPNWMKSITNLAARGWKEFAREESNTIREIRQEIQN 417
            ++L        +S  EQ  G EL    +K+   L     ++     +  I  ++ ++QN
Sbjct: 653 EIKLPRKTA---ESVAEQKMGRELISQ-LKTEYPLC----EDKLERHAGAINRLQAQMQN 704

Query: 418 LSTETGISIAEFRRIVSMVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQ 477
           ++ +TGI +   + I S ++K +R+   A+ EM+  NLRLV+S+A KY  RGL+  DL+Q
Sbjct: 705 INQKTGIDLYSLQDIGSKIKKLQRDISAARDEMITFNLRLVLSVANKYLGRGLELADLVQ 764

Query: 478 EGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKIVRT 537
           EGNIGLMKAV+KF++R+G+KFSTYATWWIRQAITR+IADQAR IRIPVH+ E++NK++  
Sbjct: 765 EGNIGLMKAVEKFDHRKGFKFSTYATWWIRQAITRAIADQARIIRIPVHVNESLNKLISA 824

Query: 538 SRQMLHEIGREPTPEELAEKLAMPLEKVRKVLKI-AKEPISLETPVGDEEDSHLGDFIED 596
           S+ + H+ GR P   EL+  L+MP  KV  + +I   EP++       E D +   ++ D
Sbjct: 825 SKVLTHKFGRGPKISELSLILSMPETKVENLKQILVMEPVA-------EADHNTNGYV-D 876

Query: 597 KNALLPIDAAIQANLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRE 656
             A+ P +  I  +       +L  LT +E++VL +RFGI   T+ TLEEVGQQF VTRE
Sbjct: 877 WAAMSPEEEIIDDDRDTNIKDLLKGLTDKEKKVLELRFGINAATELTLEEVGQQFDVTRE 936

Query: 657 RIRQIEAKALRKLKHPSRSRKLRSF 681
           RIRQIEAK+L+KL H SRS  L  F
Sbjct: 937 RIRQIEAKSLKKLAHTSRSSHLAIF 961