Pairwise Alignments

Query, 684 a.a., RNA polymerase sigma factor RpoD from Agrobacterium fabrum C58

Subject, 696 a.a., Sigma 70 (RpoD) (NCBI) from Rhodospirillum rubrum S1H

 Score =  825 bits (2132), Expect = 0.0
 Identities = 450/707 (63%), Positives = 529/707 (74%), Gaps = 34/707 (4%)

Query: 1   MATKVKENEEAENERDGATDGPLLDLSDDAVKKMIKAAKKRGYVTMDELNSVLPSEEVTS 60
           MATK     EA N ++   D PLLD  + AVKK++   K RGY+T DELN+ LP ++V+S
Sbjct: 1   MATKATNTAEAVNTQEEGGDSPLLDSMNAAVKKLVNRGKDRGYITYDELNNALPPDDVSS 60

Query: 61  EQIEDTMAMLSDMGINVIEDEDAEEA--APAEDDGDSDNEESEGGELAPSGGTALATAKK 118
           EQIEDTMAMLSDMGINV+EDE+  EA  AP  + G    EE  G E+A +G  +      
Sbjct: 61  EQIEDTMAMLSDMGINVVEDEEEGEASAAPPAEAG----EEEPGREVAATGNVS------ 110

Query: 119 KEPTDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRETMISGLCESPLTFQALIIW 178
           ++   RTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRE MI G+CESPLT +AL+ W
Sbjct: 111 EDDIGRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGREMMIGGICESPLTIRALLQW 170

Query: 179 RDELNEGTTLLREIIDLETTY---SGPEAKAAPQFQS-----PEKIEADRKAAEEKEKTR 230
            D L +G  LLR+IIDL+ TY   +GP+  A     S     P  +   R   +E ++  
Sbjct: 171 HDALVDGRMLLRDIIDLDATYGSGAGPDVVAEGLEDSVVPLSPLALSPARALPKEADEAE 230

Query: 231 RLRAPTGDEDVTDV--GGDGLPPE-----------EEEEDDDESNLSLAAMEAELRPQVM 277
               P  D+D  D   G D  P +           E+E D  E+N+SLAAME EL P+V+
Sbjct: 231 EAVTPGRDDDSEDEDEGDDAKPADGAGDEEAAPSGEDEGDGSENNVSLAAMEQELMPRVL 290

Query: 278 ETLDTIADTYKKLRKLQDQQVEARLACTGTLSSGQERRYKELKDQLITAVKSLSLNQNRI 337
           ET + IA TY KL+K QDQ++ A L       +  ER+Y +LK +L+  ++ + LN  RI
Sbjct: 291 ETFEHIATTYGKLKKAQDQRIAA-LQKGEEPGAALERKYDKLKLELVGLMEDVHLNNARI 349

Query: 338 DSLVEQLYDISKRLMQNEGRLLRLAESYGVKRDSFLEQYHGAELDPNWMKSITNLAARGW 397
           + LVEQL  ++K L+  EG+LLRLAE   ++RD FL+ Y G E+DP+W + +  L  +GW
Sbjct: 350 EQLVEQLNALNKGLITQEGKLLRLAERAKIRRDEFLDHYFGREMDPSWREDVAALPGKGW 409

Query: 398 KEFAREESNTIREIRQEIQNLSTETGISIAEFRRIVSMVQKGEREARIAKKEMVEANLRL 457
           ++F    ++ I++IR  I  ++  + + I EFRRIVS VQKGEREA  AKKEM+EANLRL
Sbjct: 410 RDFTTRFADEIKDIRGSIAEIAERSLLPIPEFRRIVSTVQKGEREASRAKKEMIEANLRL 469

Query: 458 VISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQ 517
           VISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQ
Sbjct: 470 VISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQ 529

Query: 518 ARTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLAMPLEKVRKVLKIAKEPIS 577
           ARTIRIPVHMIETINK+VRTSRQMLHEIGREPTPEELAEKL MPLEKVRKVLKIAKEPIS
Sbjct: 530 ARTIRIPVHMIETINKLVRTSRQMLHEIGREPTPEELAEKLQMPLEKVRKVLKIAKEPIS 589

Query: 578 LETPVGDEEDSHLGDFIEDKNALLPIDAAIQANLRETTTRVLASLTPREERVLRMRFGIG 637
           LETP+GDEEDSHLGDFIEDKNA+ P+DAAI +NLRET TRVLASLTPREERVLRMRFGIG
Sbjct: 590 LETPIGDEEDSHLGDFIEDKNAVQPLDAAINSNLRETCTRVLASLTPREERVLRMRFGIG 649

Query: 638 MNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLDS 684
           MNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD+
Sbjct: 650 MNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLDN 696