Pairwise Alignments

Query, 684 a.a., RNA polymerase sigma factor RpoD from Agrobacterium fabrum C58

Subject, 612 a.a., RNA polymerase sigma factor RpoD from Rahnella sp. WP5

 Score =  532 bits (1371), Expect = e-155
 Identities = 315/655 (48%), Positives = 410/655 (62%), Gaps = 54/655 (8%)

Query: 31  VKKMIKAAKKRGYVTMDELNSVLPSEEVTSEQIEDTMAMLSDMGINVIEDE-DAEEAAPA 89
           +K ++   K++GY+T  E+N  LP + V S+QIED + M++DMGI V+E+  DA++   A
Sbjct: 9   LKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVLEEAPDADDLMLA 68

Query: 90  EDDGDSDNEESEGGELAPSGGTALATAKKKEPTDRTDDPVRMYLREMGSVELLSREGEIA 149
           E+  D+D + +E          A   +  +    RT DPVRMY+REMG+VELL+REGEI 
Sbjct: 69  ENRPDTDEDAAEAA--------AQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEID 120

Query: 150 IAKRIEAGRETMISGLCESPLTFQALIIWRDELNEGTTLLREIIDLETTYSGPEAKAAPQ 209
           IAKRIE G   +   + E P     L+   D +  G   L ++I   T +  P A+    
Sbjct: 121 IAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAGEVRLSDLI---TGFVDPNAE---- 173

Query: 210 FQSPEKIEADRKAAEEKEKTRRLRAPTGDEDVTDVGGDGLPPEEEEEDDDESNLSLAAME 269
               E+I                 APT     T VG +    E++++D+DE     A  +
Sbjct: 174 ----EEI-----------------APTA----THVGSELTTEEQDDDDEDEDEDDDAEDD 208

Query: 270 AELRPQVMETLDTIADTYKKLRKLQDQQVEARLACTGTLSSGQERRYKELKDQLITAVKS 329
             + P++           +K  +L++Q    RL       S +    + LK  L    K 
Sbjct: 209 NSIDPELAR---------QKFTELREQHEATRLVIKKNGRSHKSAAEEILK--LSDVFKQ 257

Query: 330 LSLNQNRIDSLVEQLYDISKRLMQNEGRLLRLA-ESYGVKRDSFLEQYHGAELDPNWMKS 388
             L   + D LV  +  +  R+   E  ++++  E   + + +F+  + G E    W  +
Sbjct: 258 FRLVPKQFDFLVNSMRSMMDRVRAQERLIMKVCVEQCKMPKKNFVNLFAGNETSDTWFDA 317

Query: 389 ITNLAARGWKEFAREESNTIREIRQEIQNLSTETGISIAEFRRIVSMVQKGEREARIAKK 448
              +  + W E  +E +  ++    +++ +  ETG++I + + I   +  GE +AR AKK
Sbjct: 318 ALAMG-KPWSEKLKEVTEDVQRGLMKLRQIEEETGLTIEQVKDINRRMSIGEAKARRAKK 376

Query: 449 EMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQ 508
           EMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQ
Sbjct: 377 EMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQ 436

Query: 509 AITRSIADQARTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLAMPLEKVRKV 568
           AITRSIADQARTIRIPVHMIETINK+ R SRQML E+GREPTPEELAE++ MP +K+RKV
Sbjct: 437 AITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKV 496

Query: 569 LKIAKEPISLETPVGDEEDSHLGDFIEDKNALLPIDAAIQANLRETTTRVLASLTPREER 628
           LKIAKEPIS+ETP+GD+EDSHLGDFIED    LP+D+A   +LR  T  VLA LT RE +
Sbjct: 497 LKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATSESLRSATHDVLAGLTAREAK 556

Query: 629 VLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD 683
           VLRMRFGI MNTDHTLEEVG+QF VTRERIRQIEAKALRKL+HPSRS  LRSFLD
Sbjct: 557 VLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 611