Pairwise Alignments

Query, 684 a.a., RNA polymerase sigma factor RpoD from Agrobacterium fabrum C58

Subject, 662 a.a., RNA polymerase sigma factor RpoD from Phaeobacter inhibens DSM 17395

 Score =  809 bits (2090), Expect = 0.0
 Identities = 422/664 (63%), Positives = 516/664 (77%), Gaps = 26/664 (3%)

Query: 24  LDLSDDAVKKMIKAAKKRGYVTMDELNSVLPSEEVTSEQIEDTMAMLSDMGINVIEDEDA 83
           LD+S   VKKMI  A+++GY+T D+LN VLP ++V+SEQIED M+MLS+MGIN+IEDE+A
Sbjct: 20  LDMSQTQVKKMIAEAREKGYITYDQLNQVLPPDQVSSEQIEDVMSMLSEMGINIIEDEEA 79

Query: 84  EEAAPAEDDGDSDNEESEGG-ELAPSGGTALATAKKKEPTDRTDDPVRMYLREMGSVELL 142
           EE    E  G ++   +E   E+A +G  A       E  DRTDDPVRMYLREMGSVELL
Sbjct: 80  EEE---EQKGSTELVTTESNREVAVAGAAA-------EKLDRTDDPVRMYLREMGSVELL 129

Query: 143 SREGEIAIAKRIEAGRETMISGLCESPLTFQALIIWRDELNEGTTLLREIIDLETTYSGP 202
           SREGEIAIAKRIEAGR TMI+GLCESPLTFQA+ IW DEL     LLR++IDLE T+   
Sbjct: 130 SREGEIAIAKRIEAGRNTMIAGLCESPLTFQAITIWHDELLSEDILLRDVIDLEATFGNQ 189

Query: 203 ---EAKAAPQFQSPEKIEADRKAAEEKEKTRRLRAPTGDEDVTDVGGDGLPPEEEEEDDD 259
              + + +        + A++ AA+E          TG E   D  G+ +  ++++++DD
Sbjct: 190 LDEDGEVSEPVVDTSAVAANKPAAKE----------TGPE--LDADGNPIAQDDDDDEDD 237

Query: 260 ESNLSLAAMEAELRPQVMETLDTIADTYKKLRKLQDQQVEARLACTGTLSSGQERRYKEL 319
           ++N+SLAAMEA L+ +V+ TL+ I+  Y +L ++QD ++ A L   G+ S+  E+ Y+ L
Sbjct: 238 QANMSLAAMEAALKDKVLTTLEQISSDYAQLSEMQDSRISATLNEDGSFSARDEQVYQSL 297

Query: 320 KDQLITAVKSLSLNQNRIDSLVEQLYDISKRLMQNEGRLLRLAESYGVKRDSFLEQYHGA 379
           + +++  V  L L+ NRI++L++QLY I++R+M  +  +++LA+   + R  F+E Y G 
Sbjct: 298 RAEIVLLVNELHLHNNRIEALIDQLYGINRRVMSIDSSMVKLADQARINRREFVEAYRGR 357

Query: 380 ELDPNWMKSITNLAARGWKEFAREESNTIREIRQEIQNLSTETGISIAEFRRIVSMVQKG 439
           ELDPNW+  + +   RGW+ F    ++ I E+R ++  +    G+ I+EFRRIV  VQKG
Sbjct: 358 ELDPNWLSDMGDKPGRGWQMFVERSTDKIEELRADMAQVGQYVGLDISEFRRIVQQVQKG 417

Query: 440 EREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFS 499
           E+EAR AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFS
Sbjct: 418 EKEARQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFS 477

Query: 500 TYATWWIRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLA 559
           TYATWWIRQAITRSIADQARTIRIPVHMIETINK+VRT RQMLHEIGREPTPEELAEKL 
Sbjct: 478 TYATWWIRQAITRSIADQARTIRIPVHMIETINKLVRTGRQMLHEIGREPTPEELAEKLQ 537

Query: 560 MPLEKVRKVLKIAKEPISLETPVGDEEDSHLGDFIEDKNALLPIDAAIQANLRETTTRVL 619
           MPLEKVRKV+KIAKEPISLETP+GDEEDS LGDFIEDKNA+LP+D+AIQ NL+ETTTRVL
Sbjct: 538 MPLEKVRKVMKIAKEPISLETPIGDEEDSQLGDFIEDKNAVLPLDSAIQENLKETTTRVL 597

Query: 620 ASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLR 679
           ASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLR
Sbjct: 598 ASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLR 657

Query: 680 SFLD 683
           SFLD
Sbjct: 658 SFLD 661