Pairwise Alignments

Query, 684 a.a., RNA polymerase sigma factor RpoD from Agrobacterium fabrum C58

Subject, 656 a.a., RNA polymerase sigma factor, sigma-70 family from Dechlorosoma suillum PS

 Score =  526 bits (1356), Expect = e-154
 Identities = 316/693 (45%), Positives = 422/693 (60%), Gaps = 65/693 (9%)

Query: 2   ATKVKENEEAENERDGATDGPL---LDLSDDAVKKMIKAAKKRGYVTMDELNSVLPSEEV 58
           A   K  E+A  E  GAT       ++     +K +IK  K+RG++T  E+N  LP + V
Sbjct: 16  AKSSKAKEKALLESAGATQAATPVDVETRKTRLKTLIKLGKERGFLTYAEINDHLPDDVV 75

Query: 59  TSEQIEDTMAMLSDMGINVIEDEDAEEA------APAEDDGDSDNEESEGGELAPSGGTA 112
            +EQIE  +   +DMGI V ++  A E       APA  D +   EE+E          A
Sbjct: 76  DAEQIESIITTFNDMGIQVFDEAPAAEDLLMSDNAPAVADDEEVEEEAEA---------A 126

Query: 113 LATAKKKEPTDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRETMISGLCESPLTF 172
           L+T   +    RT DPVRMY+REMG+VELL+REGEI IAKRIE G + MI  +   P T 
Sbjct: 127 LSTVDSE--FGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEDGLKHMIQAISACPTTI 184

Query: 173 QALIIWRDELNEGTTLLREIIDLETTYSGPEAKAAPQFQSPEKIEADRKAAEEKEKTRRL 232
             ++   +++ +    + E+ID       P A       + E++ A+    E        
Sbjct: 185 AEILAMAEKVEKEEMRIDEVID---GLIDPNA-------AEEELAAEEAVVE-------- 226

Query: 233 RAPTGDEDVTDVGGDGLPPEEEEEDDDESNLSLAAMEAELRPQVMETLDTIADTYKKLRK 292
               GD++V D  GD       +E++     +++A   +L+   +E   TI   Y K  K
Sbjct: 227 ----GDDEVED--GD-------DEEEGGEGAAVSASLLQLKTDALERFATIKTLYGKAHK 273

Query: 293 LQDQQVEARLACTGTLSSGQERRYKELKDQLITAVKSLSLNQNRIDSLVEQLYDISKRLM 352
                    L   G+    Q++ Y +L+ Q+   + ++      I+ L + +  +   + 
Sbjct: 274 A--------LVSKGS----QDKTYLKLQQQISAELMNIRFTSKVIERLCDSVRSMVDSVR 321

Query: 353 QNEGRLLRLA-ESYGVKRDSFLEQYHGAELDPNWMKSITNLAARGWKEFAREESNTIREI 411
           + E ++  L     G+ R  F++ + G E++  W++    +A +G+       +  I+E 
Sbjct: 322 ERERKIQELCVRKVGMPRPHFIKSFPGNEINLEWVEKEIAVA-KGYGPILTRTAPNIQEE 380

Query: 412 RQEIQNLSTETGISIAEFRRIVSMVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQ 471
           ++++  L    GI + + + I   +  GE +AR AK+EM EANLRLVISIAKKYTNRGLQ
Sbjct: 381 QRKLLALQDHIGIPLKDLKDINKQMSTGEAKARRAKREMTEANLRLVISIAKKYTNRGLQ 440

Query: 472 FLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETI 531
           FLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETI
Sbjct: 441 FLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETI 500

Query: 532 NKIVRTSRQMLHEIGREPTPEELAEKLAMPLEKVRKVLKIAKEPISLETPVGDEEDSHLG 591
           NK+ R SRQ+L E G EP P  LA K+ MP EK+RK+LKI+KEPIS+ETP+GD++DSHLG
Sbjct: 501 NKMNRISRQILQETGAEPDPATLAIKMEMPEEKIRKILKISKEPISMETPIGDDDDSHLG 560

Query: 592 DFIEDKNALLPIDAAIQANLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQF 651
           DFIED     P+DAA+ + LRE T  +L +LTPRE +VLRMRFGI MNTDHTLEEVG+QF
Sbjct: 561 DFIEDTATTAPVDAALYSGLREVTKEILDTLTPREAKVLRMRFGIEMNTDHTLEEVGKQF 620

Query: 652 SVTRERIRQIEAKALRKLKHPSRSRKLRSFLDS 684
            VTRERIRQIEAKALRKL+HPSRS KLRSFLD+
Sbjct: 621 DVTRERIRQIEAKALRKLRHPSRSDKLRSFLDN 653