Pairwise Alignments

Query, 684 a.a., RNA polymerase sigma factor RpoD from Agrobacterium fabrum C58

Subject, 590 a.a., RNA polymerase, sigma 70 subunit, RpoD subfamily (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  468 bits (1203), Expect = e-136
 Identities = 288/664 (43%), Positives = 389/664 (58%), Gaps = 93/664 (14%)

Query: 31  VKKMIKAAKKRGYVTMDELNSVLPSEEVTSEQIEDTMAMLSDMGINVIEDEDAEEAAPAE 90
           +K +I   K  G++T DE+N  LP+E  T EQIE+ + +   + I +++          E
Sbjct: 10  IKSLIAKGKVSGFLTFDEVNKALPAEVNTPEQIEEIIGIFDQLEIAIVD---------TE 60

Query: 91  DDGDSDNEESEGGELAPSGGTALATAKKKEPTD---RTDDPVRMYLREMGSVELLSREGE 147
            DG   +      E  PSG   L   + +E  D   R+ DPVRMYLREMG+V LL R+GE
Sbjct: 61  KDGKKISVSPGESEEEPSGEPGLDLVEDEESADYSSRSTDPVRMYLREMGAVPLLDRDGE 120

Query: 148 IAIAKRIEAGRETMISGLCESPLTFQALIIWRDELNEGTTLLREIIDLETTYSGPEAKAA 207
           + IAK+IE G + ++  L E P+  + L      +N G  L +  I L            
Sbjct: 121 VQIAKKIELGEQDVLYALVEVPVAVEEL------INVGEDLKQNRIKL------------ 162

Query: 208 PQFQSPEKIEADRKAAEEKEKTRRLRAPTGDEDVTDVGGDGLPPEEEEEDDDESNLSLAA 267
                             K+  + +                   EE++  +DE N     
Sbjct: 163 ------------------KDVVKTI-------------------EEDDPSEDEMNQ---- 181

Query: 268 MEAELRPQVMETLDTIADTYKKLRKLQDQQVEARLACTGTLSSGQERRYKEL---KDQLI 324
                R +V+  LD I  TYKK RK     V A+L    TL        KE+   K+ ++
Sbjct: 182 -----RSRVILLLDEIKHTYKKKRK-----VYAKLDDCCTLERRVTAIQKEILGFKEDIV 231

Query: 325 TAVKSLSLNQNRIDSLVEQLYDISKRLMQNEGRLLRLAESYGVKRDSFLEQYHGAELDPN 384
             ++ + L +  ID ++E + D  +++   +  L     S G  +    + +    L+  
Sbjct: 232 NRLRDIKLEKTLIDRIIETVEDYVRQMHNCQRDLSAYILSTGKTQVEIQDIFR--MLEAR 289

Query: 385 WMKSITNLAARGWKEFAREESNTIREI---RQEIQN-LSTETGISIAEFRRIVSMVQKGE 440
            M  +   AA G      EE  + +E+   + EI N L  +   ++ +   ++  +++G 
Sbjct: 290 EMNPVAASAALG---MTVEELFSFKEMIIGKIEILNRLQDKCCHNVTDLEEVLWRIKRGN 346

Query: 441 REARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFST 500
             A  AK+E++ +NLRLV+SIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEY+RGYKFST
Sbjct: 347 THAMRAKQELIRSNLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFST 406

Query: 501 YATWWIRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLAM 560
           YATWWIRQAITR+IADQARTIRIPVHMIETINK++RTSR ++ E+GR+PTPEE+AE++  
Sbjct: 407 YATWWIRQAITRAIADQARTIRIPVHMIETINKLIRTSRYLVQELGRDPTPEEIAERMDY 466

Query: 561 PLEKVRKVLKIAKEPISLETPVGDEEDSHLGDFIEDKNALLPIDAAIQANLRETTTRVLA 620
           P++KV+KVLKIAKEPISLETP+GDEEDS LGDFIEDK A+ P +  +   L E    VLA
Sbjct: 467 PIDKVKKVLKIAKEPISLETPIGDEEDSSLGDFIEDKKAVAPAEEVVNTKLSEQIASVLA 526

Query: 621 SLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRS 680
            LTPREE+VLR RFGIG  +DHTLEEVG+ F+VTRERIRQIEAKALRKL+HP RS+ LRS
Sbjct: 527 DLTPREEQVLRKRFGIGEKSDHTLEEVGKLFNVTRERIRQIEAKALRKLRHPVRSQMLRS 586

Query: 681 FLDS 684
           + +S
Sbjct: 587 YYES 590