Pairwise Alignments

Query, 684 a.a., RNA polymerase sigma factor RpoD from Agrobacterium fabrum C58

Subject, 613 a.a., RNA polymerase sigma factor RpoD from Pantoea sp. MT58

 Score =  530 bits (1364), Expect = e-154
 Identities = 317/656 (48%), Positives = 413/656 (62%), Gaps = 55/656 (8%)

Query: 31  VKKMIKAAKKRGYVTMDELNSVLPSEEVTSEQIEDTMAMLSDMGINVIEDE-DAEEAAPA 89
           +K ++   K++GY+T  E+N  LP + V S+QIED + M++DMGI V+E+  DA++    
Sbjct: 9   LKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVVEEAPDADDLMLN 68

Query: 90  EDDGDSDNEESEGGELAPSGGTALATAKKKEPTDRTDDPVRMYLREMGSVELLSREGEIA 149
           E+  D+D + +E          A   +  +    RT DPVRMY+REMG+VELL+REGEI 
Sbjct: 69  ENSSDTDEDAAEAA--------AQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEID 120

Query: 150 IAKRIEAGRETMISGLCESPLTFQALIIWRDELNEGTTLLREIIDLETTYSGPEAKAAPQ 209
           IAKRIE G   +   + E P     L+   D++  G + L ++I   T +  P A+    
Sbjct: 121 IAKRIEDGINQVQCSVAEYPEAITYLLDQYDKVEAGESRLSDLI---TGFVDPNAE---- 173

Query: 210 FQSPEKIEADRKAAEEKEKTRRLRAPTGDEDVTDVG-GDGLPPEEEEEDDDESNLSLAAM 268
               E I                 APT     +++   D    EEE+E+DD+S+    ++
Sbjct: 174 ----EDI-----------------APTATHVGSELSEADRNDDEEEDEEDDDSSDDDNSI 212

Query: 269 EAELRPQVMETLDTIADTYKKLRKLQDQQVEARLACTGTLSSGQERRYKELKDQLITAVK 328
           + EL            + +  LRK    Q EA  +   +          E+++ L    K
Sbjct: 213 DPELA----------REKFSDLRK----QYEATRSVIKSKGRSHAAAVAEIQN-LSDVFK 257

Query: 329 SLSLNQNRIDSLVEQLYDISKRLMQNEGRLLRLA-ESYGVKRDSFLEQYHGAELDPNWMK 387
              L   + D LV  +  + +R+   E  +++L  E   + + +F+  + G E + +W K
Sbjct: 258 QFRLVPKQFDYLVGSMRTMMERVRTQERLIMKLCIELCKMPKKNFITLFTGNETNESWFK 317

Query: 388 SITNLAARGWKEFAREESNTIREIRQEIQNLSTETGISIAEFRRIVSMVQKGEREARIAK 447
           +   +  + W E   E  + +    Q++  +  ETG++I + + I   +  GE +AR AK
Sbjct: 318 AALAMN-KPWSEKLLEVQDDVMRSLQKLAQVEEETGLTIEQVKDINRRMSIGEAKARRAK 376

Query: 448 KEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIR 507
           KEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIR
Sbjct: 377 KEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIR 436

Query: 508 QAITRSIADQARTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLAMPLEKVRK 567
           QAITRSIADQARTIRIPVHMIETINK+ R SRQML E+GREPTPEELAE++ MP +K+RK
Sbjct: 437 QAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRK 496

Query: 568 VLKIAKEPISLETPVGDEEDSHLGDFIEDKNALLPIDAAIQANLRETTTRVLASLTPREE 627
           VLKIAKEPIS+ETP+GD+EDSHLGDFIED    LP+D+A   +LR  T  VLA LT RE 
Sbjct: 497 VLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATSESLRSATHDVLAGLTAREA 556

Query: 628 RVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD 683
           +VLRMRFGI MNTDHTLEEVG+QF VTRERIRQIEAKALRKL+HPSRS  LRSFLD
Sbjct: 557 KVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 612