Pairwise Alignments

Query, 684 a.a., RNA polymerase sigma factor RpoD from Agrobacterium fabrum C58

Subject, 614 a.a., RNA polymerase sigma factor RpoD from Klebsiella michiganensis M5al

 Score =  521 bits (1343), Expect = e-152
 Identities = 317/662 (47%), Positives = 407/662 (61%), Gaps = 66/662 (9%)

Query: 31  VKKMIKAAKKRGYVTMDELNSVLPSEEVTSEQIEDTMAMLSDMGINVIEDE-DAEEAAPA 89
           +K +++  K++GY+T  E+N  LP + V S+QIED + M++DMGI V+E+  DA++   A
Sbjct: 9   LKLLVQRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDLLLA 68

Query: 90  EDDGDSDNEESEGGELAPSGGTALATAKKKEPTDRTDDPVRMYLREMGSVELLSREGEIA 149
           E + ++D +  E          A   +  +    RT DPVRMY+REMG+VELL+REGEI 
Sbjct: 69  ETNNNTDEDAEEAA--------AQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEID 120

Query: 150 IAKRIEAGRETMISGLCESPLTFQALIIWRDELNEGTTLLREIIDLETTYSGPEAKAAPQ 209
           IAKRIE G   +   + E P     L+   D +      L ++I   T +  P A+   +
Sbjct: 121 IAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLI---TGFVDPNAE---E 174

Query: 210 FQSPEKIEADRKAAEEKEKTRRLRAPTGDEDVTDVGGDGLPPEEEEEDDDESN------L 263
             +P       + ++E+           DED           E+EEEDDD S+       
Sbjct: 175 DLAPTATHVGSELSQEEMDD--------DED-----------EDEEEDDDSSDDDNSIDP 215

Query: 264 SLAAME-AELRPQVMETLDTIADTYKKLRKLQDQQVEARLACTGTLSSGQERRYKELKDQ 322
            LA  + AELR Q   T DTI    +     Q++ ++                       
Sbjct: 216 ELAREKFAELRTQYELTRDTIKAKGRSHAAAQEEILK----------------------- 252

Query: 323 LITAVKSLSLNQNRIDSLVEQLYDISKRLMQNEGRLLRLA-ESYGVKRDSFLEQYHGAEL 381
           L    K   L   + D LV  +  +  R+   E  +++L  E   + + +F+  + G E 
Sbjct: 253 LSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERIIMKLCVEQCKMPKKNFITLFTGNET 312

Query: 382 DPNWMKSITNLAARGWKEFAREESNTIREIRQEIQNLSTETGISIAEFRRIVSMVQKGER 441
              W  +   +  + W E   +    ++    ++Q +  ETG++I + + I   +  GE 
Sbjct: 313 SETWFNAAIAMN-KPWSEKLLDVKEDVQRGLMKLQQIEQETGLTIEQVKDINRRMSIGEA 371

Query: 442 EARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTY 501
           +AR AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTY
Sbjct: 372 KARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTY 431

Query: 502 ATWWIRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLAMP 561
           ATWWIRQAITRSIADQARTIRIPVHMIETINK+ R SRQML E+GREPTPEELAE++ MP
Sbjct: 432 ATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMP 491

Query: 562 LEKVRKVLKIAKEPISLETPVGDEEDSHLGDFIEDKNALLPIDAAIQANLRETTTRVLAS 621
            +K+RKVLKIAKEPIS+ETP+GD+EDSHLGDFIED    LP+D+A   +LR  T  VLA 
Sbjct: 492 EDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDNTLELPLDSATTESLRAATHDVLAG 551

Query: 622 LTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSF 681
           LT RE +VLRMRFGI MNTDHTLEEVG+QF VTRERIRQIEAKALRKL+HPSRS  LRSF
Sbjct: 552 LTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSF 611

Query: 682 LD 683
           LD
Sbjct: 612 LD 613