Pairwise Alignments

Query, 684 a.a., RNA polymerase sigma factor RpoD from Agrobacterium fabrum C58

Subject, 664 a.a., RNA polymerase, sigma 70 subunit, RpoD family (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  814 bits (2102), Expect = 0.0
 Identities = 431/688 (62%), Positives = 526/688 (76%), Gaps = 30/688 (4%)

Query: 1   MATKVKENEEAENERDGATDGPLLDLSDDAVKKMIKAAKKRGYVTMDELNSVLPSEEVTS 60
           MA K  ++ + +++   A    +LD+S  AVKKMI  A+ RGY+T D+LN VLP ++V+S
Sbjct: 1   MAAKDTDDRKTDDQDAEA----MLDMSQAAVKKMIAEARTRGYITYDQLNQVLPPDQVSS 56

Query: 61  EQIEDTMAMLSDMGINVIEDEDAEEAAPAEDDGDSD-NEESEGGELAPSGGTALATAKKK 119
           EQIED M+MLS+MGIN+IE+++AE       DGD+  N  ++  E + S   A++T+   
Sbjct: 57  EQIEDVMSMLSEMGINIIEEDEAE-------DGDAPANASTQVVESSSSREVAVSTSSS- 108

Query: 120 EPTDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRETMISGLCESPLTFQALIIWR 179
           E  DRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGR TMI+GLCESPLTFQA+ IWR
Sbjct: 109 ETLDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRNTMIAGLCESPLTFQAITIWR 168

Query: 180 DELNEGTTLLREIIDLETTYSGPEAKAAPQFQSPEKIEADRKAAEEKEKTRRL-RAPTGD 238
           DEL     LLR++IDLE T  G              ++ D +++   E       AP+  
Sbjct: 169 DELLSEDILLRDVIDLEATMGGA-------------MDEDEESSSVVEMAANSPAAPSEK 215

Query: 239 EDVTDVGGDGLP---PEEEEEDDDESNLSLAAMEAELRPQVMETLDTIADTYKKLRKLQD 295
            D  ++  DG P    ++E+++DD++N+SLAAMEA L+P+V+ETLD IA  Y +L ++QD
Sbjct: 216 SDEPELDADGNPIAKTDDEDDEDDQANMSLAAMEAALKPKVLETLDLIARDYAQLSEMQD 275

Query: 296 QQVEARLACTGTLSSGQERRYKELKDQLITAVKSLSLNQNRIDSLVEQLYDISKRLMQNE 355
            ++ A L    + S   E  Y++L+ +++  V  L L+ NRI++L++QLY I++R+M  +
Sbjct: 276 LRISATLNEDESFSVEDESNYQKLRAEIVLLVNELHLHNNRIEALIDQLYGINRRIMAID 335

Query: 356 GRLLRLAESYGVKRDSFLEQYHGAELDPNWMKSITNLAARGWKEFAREESNTIREIRQEI 415
             +++LA+   + R  F+E Y G ELDP W++ +     RGW+ F    +  I E+R ++
Sbjct: 336 SSMVKLADQARINRREFVEAYRGYELDPTWLERMAEKPGRGWQAFIERSTTKIEELRSDM 395

Query: 416 QNLSTETGISIAEFRRIVSMVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDL 475
             + T  G+ I EFRRIV  VQKGE+EAR AKKEMVEANLRLVISIAKKYTNRGLQFLDL
Sbjct: 396 AQVGTYVGVDITEFRRIVQQVQKGEKEARQAKKEMVEANLRLVISIAKKYTNRGLQFLDL 455

Query: 476 IQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKIV 535
           IQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK+V
Sbjct: 456 IQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLV 515

Query: 536 RTSRQMLHEIGREPTPEELAEKLAMPLEKVRKVLKIAKEPISLETPVGDEEDSHLGDFIE 595
           RT RQMLHEIGREPTPEELAEKL MPLEKVRKV+KIAKEPISLETP+GDEEDS LGDFIE
Sbjct: 516 RTGRQMLHEIGREPTPEELAEKLQMPLEKVRKVMKIAKEPISLETPIGDEEDSQLGDFIE 575

Query: 596 DKNALLPIDAAIQANLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTR 655
           DKNA+LP+D+AIQ NL+ETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTR
Sbjct: 576 DKNAVLPLDSAIQENLKETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTR 635

Query: 656 ERIRQIEAKALRKLKHPSRSRKLRSFLD 683
           ERIRQIEAKALRKLKHPSRSRKLRSFLD
Sbjct: 636 ERIRQIEAKALRKLKHPSRSRKLRSFLD 663