Pairwise Alignments

Query, 684 a.a., RNA polymerase sigma factor RpoD from Agrobacterium fabrum C58

Subject, 619 a.a., RNA polymerase, sigma 70 subunit, RpoD (RefSeq) from Shewanella sp. ANA-3

 Score =  527 bits (1357), Expect = e-154
 Identities = 319/656 (48%), Positives = 409/656 (62%), Gaps = 52/656 (7%)

Query: 31  VKKMIKAAKKRGYVTMDELNSVLPSEEVTSEQIEDTMAMLSDMGINVIEDE-DAEEAAPA 89
           +K ++   K++GY+T  E+N  LP++ V S+QIED + M++DMGI V E+  DA++   +
Sbjct: 12  LKLLLAKGKEQGYLTYAEVNDHLPADMVDSDQIEDIIQMINDMGIRVFEEAPDADDMMMS 71

Query: 90  EDDGDSDNEESEGGELAPSGGTALATAKKKEPTDRTDDPVRMYLREMGSVELLSREGEIA 149
           ED+ D D  E            ALAT + +    RT DPVRMY+REMG+VELL+REGEI 
Sbjct: 72  EDNTDEDAAEE--------AAAALATVESE--LGRTTDPVRMYMREMGTVELLTREGEIV 121

Query: 150 IAKRIEAGRETMISGLCESPLTFQALIIWRDELNEGTTLLREIIDLETTYSGPEAKAAPQ 209
           IAKRIE G  T+ S + E P     ++   D+       L +II   + +  P+ +    
Sbjct: 122 IAKRIEEGINTVQSSVAEYPQAIAMILEQYDQYEADELRLSDII---SGFVNPDEEDL-- 176

Query: 210 FQSPEKIEADRKAAEEKEKTRRLRAPTGDEDVTDVGGDGLPPEEEEEDDDESNLSLAAME 269
              P       + +EE      L     DED  D  GDG       E DD+ N      E
Sbjct: 177 --GPTATHIGSELSEED-----LDDEDDDEDDEDEDGDG-------EGDDDGNKGPDPEE 222

Query: 270 AELRPQVMETLDTIADTYKKLRKLQDQQVEARLACTGTLSSGQERRYK-ELKDQLITAVK 328
           A  R   + T       Y+   K+ D             + G+E     +   ++    K
Sbjct: 223 ARERFSQLRT------AYENALKIID-------------AKGREHPESIQALFEIGEIFK 263

Query: 329 SLSLNQNRIDSLVEQLYDISKRLMQNEGRLLRLA-ESYGVKRDSFLEQYHGAELDPNWMK 387
              L   + D LV+ +  +  R+   E  L++L  E   + + +F++ + G E + +W  
Sbjct: 264 EFRLVPKQFDRLVKSMRSMMDRVRVQERLLMKLCVEQAKMPKKNFVKFFTGNETNLDWFD 323

Query: 388 SITNLAARGWKEFAREESNTIREIRQEIQNLSTETGISIAEFRRIVSMVQKGEREARIAK 447
           +  N + + + E  R     ++  R ++  +  ETG+ IA  + I   +  GE +AR AK
Sbjct: 324 AEKN-STKPYAEGLRMVEEDVQRCRSKLAAIEEETGLVIAAIKDINRRMSIGEAKARRAK 382

Query: 448 KEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIR 507
           KEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIR
Sbjct: 383 KEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIR 442

Query: 508 QAITRSIADQARTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLAMPLEKVRK 567
           QAITRSIADQARTIRIPVHMIETINK+ R SRQML E+GREP+PEELAE++ MP +K+RK
Sbjct: 443 QAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPSPEELAERMMMPEDKIRK 502

Query: 568 VLKIAKEPISLETPVGDEEDSHLGDFIEDKNALLPIDAAIQANLRETTTRVLASLTPREE 627
           VLKIAKEPIS+ETP+GD+EDSHLGDFIED    LP+D+A   +L+  T  VLA LT RE 
Sbjct: 503 VLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATSESLKSATHEVLAGLTAREA 562

Query: 628 RVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD 683
           +VLRMRFGI MNTDHTLEEVG+QF VTRERIRQIEAKALRKL+HPSRS  L+SFLD
Sbjct: 563 KVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEILKSFLD 618