Pairwise Alignments

Query, 684 a.a., RNA polymerase sigma factor RpoD from Agrobacterium fabrum C58

Subject, 326 a.a., RNA polymerase, sigma 38 subunit, RpoS (RefSeq) from Shewanella sp. ANA-3

 Score =  203 bits (516), Expect = 1e-56
 Identities = 96/225 (42%), Positives = 155/225 (68%)

Query: 446 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 505
           ++  M+E+NLRLV+ IA++Y NRGL  LDLI+EGN+GL++AV+KF+  RG++FSTYATWW
Sbjct: 86  SRNRMIESNLRLVVKIARRYNNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWW 145

Query: 506 IRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLAMPLEKV 565
           IRQ I R+I +Q RTIR+P+H+++ +N  +RT+R++  ++  EPT EE+AEKL +    V
Sbjct: 146 IRQTIERAIMNQTRTIRLPIHVVKELNVYLRTARELAQKLDHEPTAEEIAEKLQVSSVDV 205

Query: 566 RKVLKIAKEPISLETPVGDEEDSHLGDFIEDKNALLPIDAAIQANLRETTTRVLASLTPR 625
            ++LK+ ++  S++ P+G + D  L D + D + + P       ++  +  + L  L  +
Sbjct: 206 SRMLKLNEKITSVDIPLGGDNDKALLDVLADDDNVGPDYKVQDEDISNSVVKWLNELNTK 265

Query: 626 EERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLK 670
           +  VL  RFG+      TLE+VG +  +TRER+RQI+ +AL++L+
Sbjct: 266 QREVLARRFGLLGYEPSTLEDVGAEIGLTRERVRQIQVEALKRLR 310



 Score = 28.5 bits (62), Expect = 5e-04
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 127 DPVRMYLREMGSVELLSREGEIAIAKRIEAGRETMISGLCESPLTFQALIIWRDELNEGT 186
           D  ++YL E+G   LLS E E+  +++   G E   + + ES L     I  R   N G 
Sbjct: 52  DATQLYLGEIGFSPLLSAEEEVYFSRKALKGCEKSRNRMIESNLRLVVKIARRYN-NRGL 110

Query: 187 TLL 189
            LL
Sbjct: 111 ALL 113