Pairwise Alignments

Query, 850 a.a., bacteriophytochrome protein from Agrobacterium fabrum C58

Subject, 732 a.a., light-regulated signal transduction histidine kinase from Herbaspirillum seropedicae SmR1

 Score =  309 bits (792), Expect = 3e-88
 Identities = 183/518 (35%), Positives = 273/518 (52%), Gaps = 18/518 (3%)

Query: 3   STDYH------VDLTNCDREPIHIPGYIQPHGCLIACDNAMRMVLRHSENCGELLGLEGD 56
           S  YH      VDL+NCD EPIHIPG IQ HG L+ C      +   S N   LLG   +
Sbjct: 2   SNPYHEGRHRTVDLSNCDSEPIHIPGSIQNHGALL-CFAPDGALASRSANASTLLGALPE 60

Query: 57  LNGRTAEDVLGKKLVHDLRNALTVTGRTTRPAMLPA-METSDGRSFDISLHRYKSTTIIE 115
           +        LG+  +     A+       R   + A M       FD+  H+ +   I E
Sbjct: 61  VG-----QALGEAHLDASARAVIQAALEDRYGYVDARMLVLPAGVFDLVTHKSEGVLIAE 115

Query: 116 FEPSGSDAQPLGT----ARKMVDRIREADSVESLISRTTRLVKATLGYDRVMIYRFQEDG 171
           FE   +D   L +    A + + RI+   SV  L+S     +    G+DRVM YRF  D 
Sbjct: 116 FERRPADVAALDSFALAAHQAIQRIQRQQSVADLLSLAVDEIARITGFDRVMAYRFLHDD 175

Query: 172 AGKVVSEAKQPELESFLGQYFPASDIPQQARALYLKNTLRIISDASGTRIPVLPAVD-VS 230
           +G+VV+E ++ +LESFLGQ +PASDIP QAR LY+ N +R+I+D     +P+ P ++ ++
Sbjct: 176 SGEVVAEHRREDLESFLGQRYPASDIPAQARRLYVINPIRLIADVGAPTVPLQPDLNPLT 235

Query: 231 GEPLDLSYAHLRSVSPIHCEYLRNMGVAASMSISVIVDGALWGLIACHHYSPRVLSMPVR 290
           G  LDLS+  LRSVSP+H EYL NMGV ASMS+S+++   LWGLIACHH SP ++   VR
Sbjct: 236 GRALDLSHGILRSVSPVHIEYLSNMGVGASMSLSIVIGERLWGLIACHHMSPHLVPHAVR 295

Query: 291 IAAEMFGEFFSMHLQVLKQKRRLDTINHAHAALDRFLRLAAHHANIEELLVDSFQDFADL 350
           ++ ++  +F S  ++      R   ++ + A     +       ++   L  + + F  L
Sbjct: 296 MSCQLLSQFVSALVERNLNGERARALDDSTALRREIVAQVTDREDLVLALSSAPESFLRL 355

Query: 351 MPCDGVGLWVGNNWHGHGATPPHDAIPRLARFVASASEGRVWATHALSQAIPEAEIYAGT 410
           M   G  + +       G  P  + +  L  ++       +++T +L   +P+ +   G 
Sbjct: 356 MNAHGGAITLDRKTQVFGKAPSREGVNALINWLNEHHSADLFSTSSLGADVPDLKAAMGD 415

Query: 411 AAGMLAIPLSQVKSDYLLFFRKEIVQNLNWAGNPEKSYETGPMGDRLTPRKSFAIWKETV 470
             G+LA+   + ++ Y  +FR E V+++ W GNPEK Y  GP+G RLTPR SFA+WKETV
Sbjct: 416 ICGVLAVRFYREQNGYAFWFRNEQVEDVRWGGNPEKKYSIGPLGPRLTPRGSFAVWKETV 475

Query: 471 RLQAQPWSEADREIAEAARIALVEVAFHHSELMAGERE 508
           R ++ PW +   E A   R+ L EVA  +  L+   RE
Sbjct: 476 RGKSLPWEKTQTEAASQLRLDLQEVALTNENLVKRARE 513