Pairwise Alignments

Query, 460 a.a., hypothetical protein from Agrobacterium fabrum C58

Subject, 304 a.a., LysM domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 69.3 bits (168), Expect = 2e-16
 Identities = 55/183 (30%), Positives = 83/183 (45%), Gaps = 6/183 (3%)

Query: 281 TSEALAERFHMDENYLKELNPGIDFTVPGTIIKVVNPGEAKKGQVAR--IVAHKGIKQVF 338
           T E +A +F +  + L E NPG+D  +P    K++ P +       R  IV +    +++
Sbjct: 49  TLEDIAAQFQLGLSNLLEANPGVDPFLPKPGSKLLIPKQLILPNAPREGIVINVAEMRLY 108

Query: 339 AYGQDGNLIAAYPATIGSTDTPSPSGTHT-VERIALNPGYTYNPKINFKQGQNDKILQI- 396
            Y +    +   P  IG     +P    T V+R   NP +T  P+I  +     +IL   
Sbjct: 109 YYPKGKKTVEVLPIGIGQIGKDTPENWVTSVQRKRANPTWTPTPRIRKEYAARGEILPAV 168

Query: 397 -PPGPNGPVGTVWIALSKPTYGIHGTPEPSKIGKTNSHGCIRLTNWDATELAKMVRPGVV 455
            P GP+ P+G   + +    Y IHGT     IG   S GC+RL + D   L K V  G  
Sbjct: 169 WPAGPDNPMGLYALYIGN-LYAIHGTNASFGIGLRVSQGCVRLRHDDIEHLFKTVPIGTR 227

Query: 456 VEF 458
           V+F
Sbjct: 228 VQF 230