Pairwise Alignments

Query, 549 a.a., ABC transporter, nucleotide binding/ATPase protein from Agrobacterium fabrum C58

Subject, 639 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score =  336 bits (861), Expect = 2e-96
 Identities = 181/524 (34%), Positives = 308/524 (58%), Gaps = 7/524 (1%)

Query: 15  SYGAKKVLENVHLSFYPDAKIGILGPNGAGKSTVLKIMAGLDKEYTGEAWLAEGATLGYL 74
           ++G   +L++   +   + ++ ++G NGAGKST++K++AG      G+  + +   +  L
Sbjct: 12  AFGDHPLLDHADFALQENERVCLVGRNGAGKSTLMKVLAGEILLDDGKMQVMQDVVVSRL 71

Query: 75  EQEPKLDENKTVMENV---MEGVASKTAIV-DRYNELMMNYSDETADEGAKLQDMIDSQN 130
           EQ+P  ++  TV + V   ++G+  +  I  D+ + +  + S+   ++ A +Q+ ++   
Sbjct: 72  EQDPPRNQAGTVFDYVSGGLQGIGEQLKIYQDQLDLVATDPSESNINKLAHIQEQLEVSG 131

Query: 131 LWDLENQVEMAMDALRCPPGDSAVTGLSGGERRRVALCKLLLSQPDLLLLDEPTNHLDAE 190
            W  E++++  + +L+   G + +T LSGG +R+ AL + L   PD+LLLDEPTNHLD  
Sbjct: 132 AWRFEDRIKNVLGSLKLD-GHTKLTDLSGGWQRKAALARALACDPDVLLLDEPTNHLDVT 190

Query: 191 TIAWLEKHLRDYPGAVMMITHDRYFLDNVTGWILELDRGRGIPYEGNYSAYLQAKAKRMQ 250
           TI WLE  L+D+ G+++ I+HDR F+ ++   I++LDRG+   + G+Y  YL  K + ++
Sbjct: 191 TIEWLEGFLKDFRGSIIFISHDRAFIKSMATRIVDLDRGQLSSFPGDYENYLTEKEEMLR 250

Query: 251 QEAREDASRQKAISREQEWIASSPKARQTKSKARIRAYDELVEAAENRRP--GDAQIVIP 308
            E  ++A   K +++E+ WI    KAR+T+++ R+RA   L +    RR   G   + I 
Sbjct: 251 VEELQNAEFDKKLAQEEVWIRQGIKARRTRNEGRVRALKRLRQERSERREVQGKVNLQID 310

Query: 309 VAERLGRVVIEAENLTKSYGDRVLIENLTFKLPPGGIVGVIGPNGAGKTTLFRMITGQEQ 368
            + R G++V EAENL  S G + +++  +F +  G  + +IGPNG GK+TL +++ G  Q
Sbjct: 311 DSNRSGKIVFEAENLHYSIGGKTIVDGFSFNIMRGDRIALIGPNGCGKSTLLKILLGDLQ 370

Query: 369 PDSGSVTVGETVHLGYVDQSRDTLAGDKTVWEEISGGNDIIKLGKFEVNSRAYCGAFNFK 428
           PDSG V  G  + + Y DQ R+ L  +KTV + ++ G   + +G    ++ +Y   F F 
Sbjct: 371 PDSGKVHCGTKLEVAYFDQYRELLDPEKTVIDNLADGKQEVMVGGRLRHALSYLQDFLFS 430

Query: 429 GGDQQQKVGNLSGGQRNRVHLAKMLKAGGNVLLLDEPTNDLDTETLAALEEALEAFAGCA 488
               +  V  LSGG++NR+ LA++L    N+L+LDEPTNDLD ETL  LEE L  + G  
Sbjct: 431 PKRARTPVKALSGGEKNRLLLARILLKANNLLVLDEPTNDLDIETLELLEELLANYQGTL 490

Query: 489 VIISHDRMFLDRLATHILAFEGDSHVEWFEGNFEDYEKDKVRRL 532
           +++SHDR F+D   T    FEGD  +E F G + D ++ + + L
Sbjct: 491 LLVSHDREFVDNTVTSSWIFEGDGKIEEFVGGYHDAQQQRAQVL 534



 Score =  122 bits (307), Expect = 3e-32
 Identities = 85/289 (29%), Positives = 145/289 (50%), Gaps = 42/289 (14%)

Query: 4   QFIYHMAGLNKSYGAKKVLENVHLSFYPDAKIGILGPNGAGKSTVLKIMAGLDKEYTGEA 63
           + ++    L+ S G K +++    +     +I ++GPNG GKST+LKI+ G  +  +G+ 
Sbjct: 317 KIVFEAENLHYSIGGKTIVDGFSFNIMRGDRIALIGPNGCGKSTLLKILLGDLQPDSGKV 376

Query: 64  WLAEGATLGYLEQ-EPKLDENKTVMENVMEGVASKTAIVDRYNELMMNYSDETADEGAKL 122
                  + Y +Q    LD  KTV++N+ +G                           K 
Sbjct: 377 HCGTKLEVAYFDQYRELLDPEKTVIDNLADG---------------------------KQ 409

Query: 123 QDMIDSQNLWDLENQVEMAMDALRCPP-GDSAVTGLSGGERRRVALCKLLLSQPDLLLLD 181
           + M+  +    L + +    D L  P    + V  LSGGE+ R+ L ++LL   +LL+LD
Sbjct: 410 EVMVGGR----LRHALSYLQDFLFSPKRARTPVKALSGGEKNRLLLARILLKANNLLVLD 465

Query: 182 EPTNHLDAETIAWLEKHLRDYPGAVMMITHDRYFLDN--VTGWILELDRGRGIPYEGNYS 239
           EPTN LD ET+  LE+ L +Y G +++++HDR F+DN   + WI E D G+   + G Y 
Sbjct: 466 EPTNDLDIETLELLEELLANYQGTLLLVSHDREFVDNTVTSSWIFEGD-GKIEEFVGGYH 524

Query: 240 AYLQAKAKRMQQEAREDASRQKAISREQEWIASSPKARQTKSKARIRAY 288
              Q +A+ +Q  A E+      I ++++ +  SPK+  +K+K +  +Y
Sbjct: 525 DAQQQRAQVLQSRAAEN------IVKKEKVVEESPKSAPSKTKQKKLSY 567



 Score = 99.0 bits (245), Expect = 5e-25
 Identities = 77/256 (30%), Positives = 126/256 (49%), Gaps = 37/256 (14%)

Query: 317 VIEAENLTKSYGDRVLIENLTFKLPPGGIVGVIGPNGAGKTTLFRMITGQEQPDSGSVTV 376
           +I   N   ++GD  L+++  F L     V ++G NGAGK+TL +++ G+   D G + V
Sbjct: 3   LITIHNGLLAFGDHPLLDHADFALQENERVCLVGRNGAGKSTLMKVLAGEILLDDGKMQV 62

Query: 377 GETVHLGYVDQSRD-TLAGDKTVWEEISGG----NDIIKL------------GKFEVNSR 419
            + V +  ++Q      AG  TV++ +SGG     + +K+             +  +N  
Sbjct: 63  MQDVVVSRLEQDPPRNQAG--TVFDYVSGGLQGIGEQLKIYQDQLDLVATDPSESNINKL 120

Query: 420 AY-------CGAFNFKGG----------DQQQKVGNLSGGQRNRVHLAKMLKAGGNVLLL 462
           A+        GA+ F+            D   K+ +LSGG + +  LA+ L    +VLLL
Sbjct: 121 AHIQEQLEVSGAWRFEDRIKNVLGSLKLDGHTKLTDLSGGWQRKAALARALACDPDVLLL 180

Query: 463 DEPTNDLDTETLAALEEALEAFAGCAVIISHDRMFLDRLATHILAFEGDSHVEWFEGNFE 522
           DEPTN LD  T+  LE  L+ F G  + ISHDR F+  +AT I+  +    +  F G++E
Sbjct: 181 DEPTNHLDVTTIEWLEGFLKDFRGSIIFISHDRAFIKSMATRIVDLD-RGQLSSFPGDYE 239

Query: 523 DYEKDKVRRLGPESIK 538
           +Y  +K   L  E ++
Sbjct: 240 NYLTEKEEMLRVEELQ 255