Pairwise Alignments

Query, 259 a.a., N-acetylmuramoyl-L-alanine amidase from Agrobacterium fabrum C58

Subject, 241 a.a., AmpD (negative regulator of AmpC) (NCBI) from Rhodospirillum rubrum S1H

 Score =  170 bits (430), Expect = 3e-47
 Identities = 98/234 (41%), Positives = 131/234 (55%), Gaps = 13/234 (5%)

Query: 10  PDFGGAAVAPSPNHGERLGVAGPDIILLHYTGMTTADGALSWLRNPESQVSSHYFVFEDG 69
           PDF     A SPN  +R      D++++HYTGM +A  AL+ L +P++QVS+H+ + EDG
Sbjct: 8   PDFP-VIEALSPNADDRPPGQIIDMLVIHYTGMPSAQAALARLLDPQAQVSAHWLIDEDG 66

Query: 70  RVIQLVPESRRAWHAGKSSWAGDEDINSRSIGIEIANQGHPGGLPEFPEAQVAAVIELCR 129
              +LV E RRAWHAG S+W G   +N+RSIGIE+ N GH  G   FPEAQ+  +I L R
Sbjct: 67  TAYKLVEERRRAWHAGVSAWGGRPGVNARSIGIELVNPGHEFGYRPFPEAQMTTLIALGR 126

Query: 130 DCGRRWSIAPERVLAHSDVAPIRKVDPGEKFPWDILSQHGVGHWVEPAPIRGGRFFQRGD 189
               R  I    V+ H+DVAP RK DPGE F W  L+ +G+G W  P P+        G 
Sbjct: 127 GILERHPIPAAHVVGHADVAPTRKEDPGELFDWQRLASNGIGRW-PPPPL--------GV 177

Query: 190 HGQPVEALQSMLSIYGYGAEITGAYCEKTEGAVAAFQRHFRPALVDGIADFSTI 243
             + V+A +   +      E  G      +  V AFQRHFRP  +DG  D  T+
Sbjct: 178 RPETVDATEGEAACL---LEQIGYDISSLQATVLAFQRHFRPKRLDGRIDSETL 228