Pairwise Alignments

Query, 489 a.a., UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase from Agrobacterium fabrum C58

Subject, 444 a.a., UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase from Vibrio cholerae E7946 ATCC 55056

 Score = 70.9 bits (172), Expect = 9e-17
 Identities = 82/275 (29%), Positives = 116/275 (42%), Gaps = 52/275 (18%)

Query: 81  LVVTDPRLYLS-------LAAS-------RFYGKQPDT-MVAVTGTAGKTSVASFVRQIW 125
           LVVT+P + L+       LAA          +    DT ++A+TG+ GK++V      + 
Sbjct: 75  LVVTNPGIALATPEIQQVLAAGIPVVGDIELFAWHVDTPVIAITGSNGKSTVTDLSGVLA 134

Query: 126 AFAGHAAAQIGTTGVIAPGREDYGALTTPDPVTLHALLAELASEGVTHAAMEASSHGLDQ 185
             AG  AA  G  GV A                      +L S  V    +E SS  L+ 
Sbjct: 135 NAAGVKAAVGGNIGVPA---------------------LDLISPDVELYVLELSSFQLET 173

Query: 186 RRLDGVHLSAAGFTNLGRDHMDYHPTIEDYMAAKMRLFDTLMEKGAPAVIFADD--PWSD 243
                + L AA F NL  DHMD +  +EDY  AK+R+FD        AV+ ADD   + D
Sbjct: 174 T--SSLKLKAAAFLNLSEDHMDRYQGMEDYRQAKLRIFD----HAETAVVNADDTQTFPD 227

Query: 244 KAIGAAREAGLEVRTVGRNGQYLTLKRVEHFRHKQMIEVHHDGVIFEVDIPLAGDFQVAN 303
            A      A L+V T G   Q       +H + ++ +    + V+   ++ L G   VAN
Sbjct: 228 HA------AHLQVVTFGVE-QAAQFSLAQH-QGREYLFARDEAVMACAELSLVGRHNVAN 279

Query: 304 ALVAAGLAMSTGVPAATALKALEKLVGAAGRLELV 338
            L    L  S GV    AL AL+   G   R ++V
Sbjct: 280 VLTVLALLDSAGVNFRLALDALKSYTGLTHRCQVV 314